PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g35010.1 | ||||||||
Common Name | LOC4335859, Os04g0429400, OSNPB_040429400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 334aa MW: 35316 Da PI: 9.3515 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.6e-11 | 115 | 158 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er RR+++++ f++L llPk + +K +Ka+i+ +A+ YIk L+ LOC_Os04g35010.1 115 TERERRKKMKNMFSTLHGLLPKiP-----GKTDKASIVGEAIGYIKTLE 158 7*********************88.....9****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.884 | 107 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-15 | 111 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-14 | 112 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.91E-11 | 112 | 162 | No hit | No description |
SMART | SM00353 | 1.8E-7 | 115 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-9 | 115 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MSQEGADLSQ DVDESPYHTA VVTTNNLVRS IKAEKSNSSS SSGKPVETDI GLKVASPTMF 60 GFNTKIEGTG KNMAVKREEG EGGGRPGVSS GVSTRDTNGK GKNAMDMEHA LHIWTERERR 120 KKMKNMFSTL HGLLPKIPGK TDKASIVGEA IGYIKTLEDV VQKLETIKTE RVRAHQWAAA 180 AAAAVAANGG GEGSSHSHSQ PPRHATAVTV AVAEPAPVAA AVNAQAPQKK AAAAAAPTLQ 240 TWSAPNITLT MAGVDAFINM CLPRQRASFT TVAFVLEKHQ IDVVTSTISA DHDKSLFSVH 300 VRLNEASLQS TEGLTPEAKY KLAVSELMVR LAE* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32993937 | 0.0 | ||||
Expression Atlas | Q0JD63 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g35010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g35010 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108728 | 0.0 | AK108728.1 Oryza sativa Japonica Group cDNA clone:002-150-C12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636599.1 | 0.0 | transcription factor bHLH95 | ||||
TrEMBL | Q01LG2 | 0.0 | Q01LG2_ORYSA; OSIGBa0093L02.5 protein | ||||
TrEMBL | Q0JD63 | 0.0 | Q0JD63_ORYSJ; Os04g0429400 protein | ||||
STRING | OS04T0429400-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2005 | 36 | 91 |
Representative plant | OGRP1226 | 15 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 4e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g35010.1 |
Entrez Gene | 4335859 |