PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g08290.1 | ||||||||
Common Name | Os04g0165200, OSJNBa0019G23.4, OSNPB_040165200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 372aa MW: 38884.6 Da PI: 7.884 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.4 | 3.1e-07 | 203 | 225 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H LOC_Os04g08290.1 203 HYCQVCGKGFKRDANLRMHMRAH 225 68*******************99 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00034 | 289 | 312 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ Cg k F s+L++H + + LOC_Os04g08290.1 289 YVCGRCGgKQFAVLSDLRTHEKHC 312 9*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00018 | 0 | 180 | 192 | IPR018247 | EF-Hand 1, calcium-binding site |
SuperFamily | SSF57667 | 4.85E-6 | 202 | 229 | No hit | No description |
PROSITE profile | PS50157 | 12.653 | 203 | 230 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0034 | 203 | 225 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.2E-6 | 203 | 229 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 205 | 225 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 251 | 284 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 30 | 289 | 311 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000032 | anatomy | tetrad of microspores | ||||
PO:0001029 | developmental stage | E tetrad stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MNPQEFQFFQ GVEQEMLLLS HGGGGAAAAA SDDVLAYHVG VLRDKVQQLE PLVGMVVVSP 60 AAPHGQLRRD AAAMAASSAC SVLQEITAAA SAVAHRLEQA NAASSASFRR GVAFADDAHA 120 AGGVQMFAAG AHGGGQGGDD EAGASLFHHH GPPAVGAPTV FRAGATTTAA ASSSGGGDDD 180 GDGDGEVDVV ELEASYLLAR YTHYCQVCGK GFKRDANLRM HMRAHGDEYK TAAALTSTGA 240 GMRAAARRCS YSCPAEGCRW NRRHPRFQAL KSVVCAKNHY RRSHCPKMYV CGRCGGKQFA 300 VLSDLRTHEK HCGELRWLCS CGTFFSRKDK LMGHVALFAA GHAPVPVAPE ASPSTTTTGT 360 TTDRSRTGLI D* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.76617 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116012650 | 0.0 | ||||
Expression Atlas | Q7XXA5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g08290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g08290 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243285 | 0.0 | AK243285.1 Oryza sativa Japonica Group cDNA, clone: J100051N01, full insert sequence. | |||
GenBank | AL662959 | 0.0 | AL662959.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635006.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | Q7XXA5 | 0.0 | Q7XXA5_ORYSJ; OSJNBa0019G23.4 protein | ||||
STRING | OS04T0165200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7441 | 32 | 51 | Representative plant | OGRP830 | 16 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 3e-79 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g08290.1 |