PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g63750.1
Common NameHSF13, HSF3, HSFA1, LOC4334826, Os03g0854500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 507aa    MW: 55277.2 Da    PI: 4.7268
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g63750.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.3e-35381292102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+ye+++d++++ ++sw   +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll
  LOC_Os03g63750.1  38 FLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLL 121
                       9*********************99*****************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  LOC_Os03g63750.1 122 KTINRRKP 129
                       ******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.39E-3633127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-6134127IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3835127IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.6E-3138127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-193861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MEAAVAAAAA AAGAVTTAVA PPPGAAVSNG VATAPPPFLM KTYEMVDDPA TDAVVSWGPG  60
NNSFVVWNTP EFARDLLPKY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL  120
LKTINRRKPT HGNNQVQQPQ LPAAPVPACV EVGKFGMEEE IEMLKRDKNV LMQELVRLRQ  180
QQQTTDHQLQ TLGKRLQGME QRQQQMMSFL AKAMHSPGFL AQFVQQNENS RRRIVASNKK  240
RRLPKQDGSL DSESASLDGQ IVKYQPMINE AAKAMLRKIL KLDSSHRFES MGNSDNFLLE  300
NYMPNGQGLD SSSSTRNSGV TLAEVPANSG LPYVATSSGL SAICSTSTPQ IQCPVVLDNG  360
IPKEVPNMSA VPSVPKAVAP GPTDINILEF PDLQDIVAEE NVDIPGGGFE MPGPEGVFSL  420
PEEGDDSVPI ETDEILYNDD TQKLPAIIDS FWEQFLVASP LSVDNDEVDS GVLDQKETQQ  480
GNGWTKAENM ANLTEQMGLL SSHHTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-262312718129Heat shock factor protein 1
5d5v_B1e-262312718129Heat shock factor protein 1
5d5v_D1e-262312718129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.97170.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329856390.0
Expression AtlasQ84T61-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g63750.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g63750
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004300.0AK100430.1 Oryza sativa Japonica Group cDNA clone:J023088F14, full insert sequence.
GenBankAK1061180.0AK106118.1 Oryza sativa Japonica Group cDNA clone:001-207-E07, full insert sequence.
GenBankAY3444850.0AY344485.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF3 mRNA, complete cds.
GenBankEU8469830.0EU846983.1 Oryza sativa Japonica Group clone KCS225D11 heat shock factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630421.10.0heat stress transcription factor A-1
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLB7EQF40.0B7EQF4_ORYSJ; Heat shock factor
STRINGOS03T0854500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-122heat shock factor 3
Publications ? help Back to Top
  1. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  2. Yokotani N, et al.
    Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis.
    Planta, 2008. 227(5): p. 957-67
    [PMID:18064488]
  3. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]
  4. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]