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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os03g55550.1 |
Common Name | OsJ_12693, OSJNBa0002J24.23 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 311aa MW: 34267.3 Da PI: 7.8069 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os03g55550.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 32 | 2.3e-10 | 226 | 266 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
rrRR+riN ++ L++l+P+ +K++ +++Le+Av+Y+k Lq
LOC_Os03g55550.1 226 RRRRERINGRLRILQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 266
9******************97.....8******************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
GO:0005634 | Cellular Component | nucleus |
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MAVDWIWERR RREEEYNHQM SQDELQQPGQ VQWTPAPEEK SEIAVQFFTA PYPCQNGQLD 60 HGEHHALGGI GACSSVHWQP DRGTCYWPPP LSGDGGGGSG SGSSGTGEGS YIGERCYYVG 120 EPDVPIGLNL LVGDNDGAGV VLRDAAPQAK RRTQAGHGGD LGRQKKKARV SDKRNQESMQ 180 SGSCSDNESN CSQVNRRKVD RVAGGGNGKV PARRRSATIA QSLYARRRRE RINGRLRILQ 240 KLVPNGTKVD ISTMLEEAVH YVKFLQLQIK VEVQIVCHDQ MLSSDELWMY APIVYNGMDL 300 GIDLNISPPR *
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 7 | 12 | ERRRRE |
2 | 212 | 228 | RRRSATIAQSLYARRRR |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC090713 | 0.0 | AC090713.6 Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete sequence. |
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |