PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g55164.1 | ||||||||
Common Name | Os03g0758900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 1003aa MW: 109042 Da PI: 7.1612 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.5 | 2.7e-28 | 757 | 813 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+ k++e prsYY+Ct gCpvkk vers+ d+ + eitY+g+H h+ LOC_Os03g55164.1 757 KDGYNWRKYGQKQLKDAESPRSYYKCTRDGCPVKKIVERSS-DGCIKEITYKGRHSHP 813 8****************************************.***************7 PP | |||||||
2 | WRKY | 101.8 | 3.9e-32 | 902 | 960 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg++ prsYY+Ct gC+v+k++er++ dpk+v +tY+g+Hnh+ LOC_Os03g55164.1 902 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADGCNVRKQIERASADPKCVLTTYTGRHNHD 960 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.128.20 | 1.2E-24 | 125 | 286 | IPR012674 | Calycin |
SuperFamily | SSF50814 | 1.62E-12 | 126 | 202 | IPR011038 | Calycin-like |
SuperFamily | SSF50814 | 1.62E-12 | 229 | 286 | IPR011038 | Calycin-like |
Pfam | PF12204 | 8.7E-13 | 257 | 438 | IPR022017 | Domain of unknown function DUF3598 |
SuperFamily | SSF50814 | 3.29E-30 | 301 | 443 | IPR011038 | Calycin-like |
Gene3D | G3DSA:2.40.128.20 | 7.3E-43 | 302 | 443 | IPR012674 | Calycin |
PROSITE profile | PS50811 | 22.768 | 751 | 815 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.1E-26 | 752 | 815 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-22 | 755 | 815 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.8E-31 | 756 | 814 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-21 | 757 | 813 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.6E-34 | 887 | 962 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-27 | 894 | 962 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.059 | 897 | 962 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-36 | 902 | 961 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.2E-24 | 903 | 960 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009071 | anatomy | anther wall tapetum | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 1003 aa Download sequence Send to blast |
MAEALVAVLR LAASAAATAR PQSRSGRHGS CAARVPCPGP SPFRRGRLCA RAAVAGPPEV 60 DDDDAMTIDN LRRFFDVNVG KWNGAFYFFF FFFFFFFFFF SGFVVCKTET LSVLVRVPVC 120 LCSSRQQFDA HGRVLQGIST RLSVSTYGED DLISLLQSLY IKQASSQISF VDEEDSEEWV 180 EYKIKETNMF TVDKYQQVGF FQEEKAFALR YQTAGMLETV LRAGVLGEDD TGEESPKNLK 240 IPSRKPSIVC ENCLYSREGN GRVRAFHIMD PKGVLDMLII FHEKQGSEVP LMYSSDDADI 300 TNSDRIAPLL GRWEGRSVTK RSGVYGATLS EADTVVLLEK DRNGQLILDN MSTKSGSSTT 360 TTVHWTGSAN NNLLQFDGGY EMTLLPGGMY MGYPTDIGKI VNDMDSFHLE FCWMESPGKR 420 QRLVRTYDSA GLAVSSTYFF ETKRLSSLKP HHHLRRRVGD HGRTPDLSNA NRVAGEGEGG 480 DRFRRRRVAA VTAAAIDRAK SPEEGDSFRW FWKYSAQAVG ASQSNPNTSR SDPLSWSAAV 540 VVIDREALPL HKQRKLTRAA AVAMADRRRS DGGGGMQQQP FTSPGQERVF DGGGVPGQVA 600 APYGSDFDQS SYMALLAAGA VGVGVGVQPT AAPWAVEEDV AAAPPGISLA PQFSMANYAP 660 PPSYQHPATL VSPPLAAGLH PYPPYLHGVD APPPQWPPRP APPPSFSVLD LAAAAAPHEQ 720 RHSMQQLLLR AAAFGGGMHA AAAPAPAAAA AIEQPAKDGY NWRKYGQKQL KDAESPRSYY 780 KCTRDGCPVK KIVERSSDGC IKEITYKGRH SHPRPVEPRR GGAASSSSSA MAAGTDHNAG 840 AAADDAAAAD EDDPSDDDDT LLHEDDDDGE EGHDRGVDGE VGQRVVRKPK IILQTRSEVD 900 LLDDGYRWRK YGQKVVKGNP RPRSYYKCTA DGCNVRKQIE RASADPKCVL TTYTGRHNHD 960 PPGRPPAAAN LQMPGPAAMR LAGGGTAHQQ PSGGAHQMKE ET* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yvf_A | 1e-144 | 63 | 443 | 15 | 356 | BFA1 |
5yvf_B | 1e-144 | 63 | 443 | 15 | 356 | BFA1 |
5yvf_C | 1e-144 | 63 | 443 | 15 | 356 | BFA1 |
5yvf_D | 1e-144 | 63 | 443 | 15 | 356 | BFA1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.58285 | 0.0 | leaf| panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 33519191 | 0.0 | ||||
Expression Atlas | Q7XAA5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g55164.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g55164 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY341852 | 0.0 | AY341852.1 Oryza sativa (japonica cultivar-group) WRKY11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q7XAA5 | 0.0 | Q7XAA5_ORYSJ; Os03g0758900 protein | ||||
STRING | ORUFI03G36320.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2875 | 32 | 36 |
Representative plant | OGRP7969 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 2e-35 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g55164.1 |