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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os03g53050.1 |
Common Name | LOC4334062, OJ1365_D05.15, Os03g0741400, OSNPB_030741400 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
WRKY |
Protein Properties |
Length: 388aa MW: 42051.9 Da PI: 10.5119 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os03g53050.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 99.1 | 2.7e-31 | 321 | 379 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYeg+Hnh+
LOC_Os03g53050.1 321 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 379
69*************************988****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 388 aa
Download sequence Send
to blast |
MEGMEEANRE AVQSCHRVLT LLSSPHSQLV PNKDLAAATG EAVAKFCSVA SRLNNGNGLQ 60 GHARVRKIKK PLPIFDSNLF LESPALAVAM AAKTPNSSPI TSLQLFPRYH QMEGSSSKDP 120 VRIPAQFPKR LLLDNPAVDS DGPSRGPPLQ LIQPVSVAPP AGTPHPALPS AHLHFIQQHQ 180 SYQRFQLMQQ MKMQSEMIKR SGLGEQGGSN GGGKGVNLKF DSSNCTASSS RSFLSSLSME 240 GSIASLDGSR SSRPFQLVSG SQTSSTPELG LMQRRRCTGR EDGSGRCTTG SRCHCAKKRK 300 LRIRRSIKVP AISNKVADIP ADEFSWRKYG QKPIKGSPHP RGYYKCSSVR GCPARKHVER 360 CVDDPSMLIV TYEGDHNHNR VLAAQPA*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Os.59130 | 0.0 | callus| flower| leaf| panicle| root| seed |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK121838 | 0.0 | AK121838.1 Oryza sativa Japonica Group cDNA clone:J033100L17, full insert sequence. |