PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g51910.1 | ||||||||
Common Name | LOC4333984, Os03g0728900, OsJ_12437, OSJNBb0011H13.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 36253.6 Da PI: 5.6272 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.7 | 1.4e-10 | 156 | 204 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq LOC_Os03g51910.1 156 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 204 58**************************....899*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.05E-16 | 151 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.16E-11 | 151 | 208 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-16 | 153 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.447 | 153 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-8 | 156 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-10 | 159 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MYSGQQSDQC PGPNSGKEFL EVNWDSVALH QKMGYNSGAF GFQAYPMVLE DREGLYRSPN 60 GTFCQNIQLS DDHSSGAKRR KGIDDHIALL NPSASSRIQN VGDQQTEVSS QQERISMEED 120 NQKSCSKMQS KEDSSDGDGT KEDYVHVRAK RGQATNSHSL AERLRRKKIS ERMKLLQDLV 180 PGCSKITGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPE LSFDIEQILS KQMMLSQDRH 240 LAFYGVDPGS SALVAHFNQG IMQPEMLCNV SNPADVLQGT TIQDISTVNQ IPAMWEGLQN 300 IPHLNYNPGG AMAEGSTNNS GSMKIEK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.24540 | 0.0 | leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115455098 | 0.0 | ||||
Expression Atlas | Q84LH4 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g51910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g51910 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632666.1 | 0.0 | transcription factor bHLH74 | ||||
Refseq | XP_015632667.1 | 0.0 | transcription factor bHLH74 | ||||
Refseq | XP_025879964.1 | 0.0 | transcription factor bHLH74 | ||||
Refseq | XP_025879965.1 | 0.0 | transcription factor bHLH74 | ||||
TrEMBL | A0A0E0P0T0 | 0.0 | A0A0E0P0T0_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XJ66 | 0.0 | A2XJ66_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q84LH4 | 0.0 | Q84LH4_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed | ||||
STRING | ORUFI03G34210.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6033 | 36 | 50 |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 1e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g51910.1 |
Entrez Gene | 4333984 |