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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os03g46860.1 |
Common Name | LOC4333691, Os03g0671800, OSNPB_030671800 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 386aa MW: 39729.2 Da PI: 7.3446 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os03g46860.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 47 | 4.7e-15 | 192 | 238 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h ++Er+RR++iN++f eL +++P + kK++Ka+iL Av+Y+k++q
LOC_Os03g46860.1 192 EHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDAVRYVKEMQ 238
699************************.....9*****************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 386 aa
Download sequence Send
to blast |
MEDSSLFMEW AMETLQHLHP LPATPPPAGG GYAGDNATFP SLQALRESSV SQNGMAPPEP 60 TAHEGHRASN SWSSGDTDSV SGGGGGAVME HDGWSTSPNS VRCAAGGGGG GGGGGLWPVS 120 WNFSSAMTQP CNDQATPSNP PTTTRARYGG GGVRYLPAAV SPSPSAQTRR ASSKGNGGGG 180 SGSSSAAPYA QEHIIAERKR REKINQRFIE LSTVIPGLKK MDKATILSDA VRYVKEMQEK 240 LSELEQHQNG GVESAILLKK PCIATSSSDG GCPAASSAVA GSSSSGTARS SLPEIEAKIS 300 HGNVMVRIHG ENNGKGSLVR LLAAVEGLHL GITHTNVMPF SACTAIITIM AKVEDGVSVT 360 AEDIVGKLNT VLQQNSRNSA RETKS*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 196 | 201 | ERKRRE |
2 | 197 | 202 | RKRREK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK107190 | 0.0 | AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence. |