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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os03g46790.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 266aa MW: 28748.9 Da PI: 5.1677 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os03g46790.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 49.2 | 9.2e-16 | 116 | 161 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h +Er+RR++iN++f eL ++Pk+ kK++Ka+iL A YI++Lq
LOC_Os03g46790.1 116 HVVAERKRREKINQRFMELSAVIPKL-----KKMDKATILSDAASYIRELQ 161
8899**********************.....9******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 266 aa
Download sequence Send
to blast |
MDDSSLFLHW AVSTLQHQHP AAVAVVADDD ATFFSFQELC DTEEVVVVPV QEEVITEAHG 60 GGASRIGLAV AVDEHGGWSR SPNPGARPPS GGCGSNNLPL MSWDFSAASV AVQLEHVVAE 120 RKRREKINQR FMELSAVIPK LKKMDKATIL SDAASYIREL QEKLKALEEQ AAARVTEAAM 180 ATPSPARAMN HLPVPPEIEV RCSPTNNVVM VRIHCENGEG VIVRILAEVE EIHLRIINAN 240 VMPFLDQGAT MIITIAAKAS SSLLY*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
5gnj_B | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
5gnj_E | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
5gnj_F | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
5gnj_G | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
5gnj_I | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
5gnj_M | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
5gnj_N | 3e-13 | 114 | 164 | 7 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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|
No. |
Start |
End |
Sequence |
1 | 119 | 124 | ERKRRE |
2 | 120 | 125 | RKRREK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC116369 | 0.0 | AC116369.5 Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence. |
GenBank | AC146718 | 0.0 | AC146718.2 Oryza sativa chromosome 3 B1130H05 genomic sequence, complete sequence. |
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |