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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os03g42100.1 |
Common Name | LOC4333457, Os03g0617800, OsJ_11741, OSJNBa0063J18.7 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 311aa MW: 33560 Da PI: 4.8506 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os03g42100.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 31.1 | 4.3e-10 | 237 | 277 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
r+RR+riN+++ L+ l+P+ +K++ +++Le+A++Y+k Lq
LOC_Os03g42100.1 237 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAMHYVKFLQ 277
9******************97.....8******************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
GO:0005634 | Cellular Component | nucleus |
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MESGGVIAEA GWSSLDMSSQ AEESEMMAQL LGTCFPSNGE DDHHQELPWS VDTPSAYYLH 60 CNGGSSSAYS STTSSNSASG SFTLIAPRSE YEGYYVSDSN EAALGISIQE QGAAQFMDAI 120 LNRNGDPGFD DLADSSVNLL DSIGASNKRK IQEQGRLDDQ TKSRKSAKKA GSKRGKKAAQ 180 CEGEDGSIAV TNRQSLSCCT SENDSIGSQE SPVAAKSNGK AQSGHRSATD PQSLYARKRR 240 ERINERLKIL QNLVPNGTKV DISTMLEEAM HYVKFLQLQI KLLSSDEMWM YAPIAYNGMN 300 IGIDLNLSQH *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC107206 | 0.0 | AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence. |
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |