|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
LOC_Os03g26210.3 |
Common Name | LOC4332972, Os03g0379300, OsJ_11051, OSJNBa0013O08.3, OSNPB_030379300 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
Family |
bHLH |
Protein Properties |
Length: 253aa MW: 27890.5 Da PI: 5.7676 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os03g26210.3 | genome | MSU | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 13.6 | 0.00013 | 37 | 86 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r++ ++erE+ R ++N+ f eL +l + + + Ka iL+ +++ +++L
LOC_Os03g26210.3 37 RKVHKSEREKLKRGHLNDLFGELGNMLEAD----RQSNGKACILTDTTRILRDL 86
678899*********************997....57788899999888888776 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010106 | Biological Process | cellular response to iron ion starvation |
GO:0055072 | Biological Process | iron ion homeostasis |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MVPSERGDVA TAIRPAAADK LVHGPISDKK CRKKVPRKVH KSEREKLKRG HLNDLFGELG 60 NMLEADRQSN GKACILTDTT RILRDLLSQV KSLRQENSTL QNESNYVTME RNELQDENGA 120 LRSEISDLQN ELRMRATGSP GWGHGATGSP LPVPPSPGTV FPSQQPMQPS PMTTSTVFPL 180 QQPLPQPTVI EPSARQPLEL KLFLEAPPAE DPEPSEDQEA PNNVARPQPR YPTEASSWPI 240 SLGLPRMEDE QM*
|
Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Os.9216 | 1e-165 | callus| flower| leaf| panicle| root| seed| stem |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK061515 | 0.0 | AK061515.1 Oryza sativa Japonica Group cDNA clone:006-309-H04, full insert sequence. |
GenBank | AK068704 | 0.0 | AK068704.1 Oryza sativa Japonica Group cDNA clone:J013159M16, full insert sequence. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Yilmaz A, et al.
GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] - Wu H,Ye H,Yao R,Zhang T,Xiong L
OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]
|