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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os03g25430.1 |
Common Name | Os03g0370250, OSNPB_030370250 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
GeBP |
Protein Properties |
Length: 378aa MW: 39938.4 Da PI: 6.1877 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os03g25430.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 111.7 | 4.6e-35 | 82 | 181 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkife 90
lfqrlw+eeDeiv+L+++ +f+a++g+ +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ +++g+++sf+++h+q ife
LOC_Os03g25430.1 82 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVDRlRATGQSFSFRSPHEQAIFE 174
79*************************9977778***************************************999***************** PP
DUF573 91 lskkiWg 97
+++ iW+
LOC_Os03g25430.1 175 IARGIWR 181
******7 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 378 aa
Download sequence Send
to blast |
MLPTVVDDPS AAAAAAVGAA ASSSFPDADV YGNGDSDDID FPSDPNHATT QAFSSAAAAA 60 AAAGPGGGGG AGSGSGGERR PLFQRLWTEE DEIVILRAFA EFTAQRGTAF ASHQYDTDPF 120 YEDMRRRLQL DFSKSQLVEK LRRLKRKYRN CVDRLRATGQ SFSFRSPHEQ AIFEIARGIW 180 RPTSDKHGRD ADSDDDALPD AAAAVAVPAP ANGEVRSPSS TRAQQRRGRR RRTAAAAAAT 240 ATAADASEPP QPYPPAPAPA PVKAEDALPH FFPQGAAVTA TAHVHGVDPA SAAASAAANA 300 EGGILAPLFK EMVRAMLTAG MAPPSLEPPA PGIPMKGERW RQQRILELEV YLRRIDLLQD 360 QVRTALEELK STPPATQ*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC082644 | 0.0 | AC082644.10 Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence. |
GenBank | AK243208 | 0.0 | AK243208.1 Oryza sativa Japonica Group cDNA, clone: J100042A05, full insert sequence. |
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
GenBank | CT837748 | 0.0 | CT837748.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129A20, full insert sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G04930.2 | 5e-33 | DNA-binding storekeeper protein-related transcriptional regulator |