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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os03g18330.1 |
Common Name | Os03g0294300 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
Trihelix |
Protein Properties |
Length: 215aa MW: 23714 Da PI: 10.3133 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os03g18330.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 28.9 | 3.1e-09 | 20 | 102 | 2 | 84 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84
W++ e+ aLi+a + + +rg l +++W++ ++++ + r +r+ qC+ + + l+ ryk++ + s +++f++
LOC_Os03g18330.1 20 WSDGETAALIDAWGPPHVARSRGPLPAKDWRAAASAVnarraaAGRRHNRTRAQCRARVQTLKERYKRELAKPPP------SGWRHFSR 102
***************************************999888889*******************98665553......24555555 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 215 aa
Download sequence Send
to blast |
MSSSKPSPQQ HQQQRANEWW SDGETAALID AWGPPHVARS RGPLPAKDWR AAASAVNARR 60 AAAGRRHNRT RAQCRARVQT LKERYKRELA KPPPSGWRHF SRLQEFLLAG PPPGFPPKTM 120 PPASVKKEEE EECQDEAVGG GGGSGGLLGR WVVPTRPRNG AAAWCPVGVV VTKLAEVYER 180 VELARLEVEK EKVAMEMEKA MQEAVKLKEE KLDT*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC137072 | 0.0 | AC137072.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence. |
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G05550.2 | 1e-07 | sequence-specific DNA binding transcription factors |