PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g15440.1 | ||||||||
Common Name | LOC4332318, Os03g0260600, OsJ_10212, OSNPB_030260600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 410aa MW: 43113.3 Da PI: 5.6172 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.2 | 1.5e-13 | 201 | 247 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L LOC_Os03g15440.1 201 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 247 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.022 | 198 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-11 | 201 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-15 | 202 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-15 | 202 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-13 | 204 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.17E-5 | 211 | 250 | No hit | No description |
CDD | cd04873 | 4.63E-6 | 285 | 331 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 9.0E-5 | 285 | 335 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009038 | anatomy | palea | ||||
PO:0001048 | developmental stage | palea development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MGAHGDHRHH HHHQEAGVLV DEEEEEVIEQ ACGGPTSGVV EQEVGGDGGG VCQDAAGMVF 60 EATSSVGSVS ATMGPPPIMC WPPPAQPVHG AIHHHHNLGG GGGQQSPFFP LLPPLPPQPP 120 PPPPFFADFY ARRALQYAYD HSGGASSSSD PLGLGGLYMG HHGSHVAGMM MPPPFAPSPF 180 GDLGRMTAQE IMDAKALAAS KSHSEAERRR RERINAHLAR LRSLLPNTTK TDKASLLAEV 240 IQHVKELKRQ TSEITEEACP LPTESDELTV DASSDEDGRL VVRASLCCDD RTDLLPDLIR 300 ALKALRLRAL KAEITTLGGR VKNVLVVTGD DSAAAAACAG TDGDGEQQEE AMQAPMSPQH 360 TVASIQDALR AVMERTASAT EESGGSGAGG GLKRQRTTSL SAILENRSI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 206 | 211 | ERRRRE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54743 | 0.0 | callus| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32991858 | 0.0 | ||||
Expression Atlas | Q10NS6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g15440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g15440 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106649 | 0.0 | AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649780.1 | 0.0 | PREDICTED: transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 6e-75 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A0D9Z4Z0 | 0.0 | A0A0D9Z4Z0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GK40 | 0.0 | A0A0E0GK40_ORYNI; Uncharacterized protein | ||||
TrEMBL | I1P9P5 | 0.0 | I1P9P5_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q10NS6 | 0.0 | Q10NS6_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed | ||||
STRING | OGLUM03G11280.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OS03T0260600-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA03G12280.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA03G0109100.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 |
Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 3e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g15440.1 |
Entrez Gene | 4332318 |
Publications ? help Back to Top | |||
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