PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g12940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 811aa MW: 87475.1 Da PI: 5.102 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.5e-11 | 637 | 685 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq LOC_Os03g12940.1 637 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 685 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50053 | 8.96 | 1 | 88 | IPR000626 | Ubiquitin domain |
Gene3D | G3DSA:3.10.20.90 | 9.5E-7 | 20 | 99 | No hit | No description |
SuperFamily | SSF81383 | 1.83E-13 | 337 | 392 | IPR001810 | F-box domain |
PROSITE profile | PS50181 | 11.405 | 337 | 383 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 2.2E-10 | 340 | 392 | No hit | No description |
Pfam | PF12937 | 4.6E-6 | 342 | 384 | IPR001810 | F-box domain |
SMART | SM00256 | 1.5E-5 | 343 | 383 | IPR001810 | F-box domain |
CDD | cd00083 | 2.97E-11 | 632 | 689 | No hit | No description |
SuperFamily | SSF47459 | 4.45E-17 | 632 | 700 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-17 | 634 | 701 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.796 | 634 | 684 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-9 | 637 | 685 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-10 | 640 | 690 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 811 aa Download sequence Send to blast |
MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS 60 EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA 120 ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGDTK 180 REMENVGGAD GTVICRLVVA LHAALLDAGF LYANPVGSCL QLPQNWASGS FVPVSMKYTL 240 PELVEALPVV EEGMVAVLNY SLMGNFMMVY GHVPGATSGV RRLCLELPEL APLLYLDSDE 300 VSTAEEREIH ELWRVLKDEM CLPLMISLCQ LNNLSLPPCL MALPGDVKAK VLEFVPGVDL 360 ARVQCTCKEL RDLAADDNLW KKKCEMEFNT QDTCGCMMCK CIYSDQRKDI VLADKYTCGN 420 YMQKPVTQPG RWLIILVYHS LLCQYITIGL SLLWYHLVDL VQDAPAAGIH FDCIIPLPIN 480 PYQLPPSAGA CCSTTQASAS AKDGGNMYSP PCSAAASSQG HCFAVGANQL ASLDLAMDFD 540 EPILFPVHNA SLQEGIQFYN PTGDTQLSRN MSIDKCLKGS KRKGSGEGSS SLHSQEETGE 600 MPQRELSMEH AGEKAGDADA SREEYVHVRA KRGQATNSHS LAERFRREKI NERMKLLQDL 660 VPGCNKITGK AMMLDEIINY VQSLQRQVEF LSMKLSTISP ELNSDLDLQD ILCSQDARSA 720 FLGCSPQLSN AHPNLYRAAQ QCLSPPGLYG SVCVPNPADV HLARAGHLAS FPQQRGLIWN 780 EELRNIAPAG FASDAAGTSS LENSDSMKVE * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.52614 | 0.0 | callus| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116639272 | 0.0 | ||||
Expression Atlas | Q10PJ7 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g12940.1 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g12940 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135157 | 0.0 | AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q10PJ7 | 0.0 | Q10PJ7_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed | ||||
STRING | ORGLA03G0090200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4536 | 29 | 33 |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 2e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g12940.1 |