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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os03g12760.1 |
Common Name | OJ1203D03.3 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 323aa MW: 34988.3 Da PI: 5.9802 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os03g12760.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 34.3 | 4.2e-11 | 157 | 204 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ h ++Er+RR+++ + f L +++P + kK +K++ L +++Y+k+L+
LOC_Os03g12760.1 157 QEHVIAERKRREKLQQQFVALATIVPGL-----KKTDKISLLGSTIDYVKQLE 204
5799************************.....9*****************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 323 aa
Download sequence Send
to blast |
MSTLSNKVSL SSNLLNLQTG LAEEPEELTY MYHQEEHARM QEQFAGTPLV EQPVRFDQFY 60 PASMAPNQFH PSHCSSFPAF GGSSALPSLA FGAVATTKKE QVQQPSPSSS NVLSFAGQVQ 120 GSTTTLDFSG RGWQQDDGVG VFQQPPERRS RPPANAQEHV IAERKRREKL QQQFVALATI 180 VPGLKKTDKI SLLGSTIDYV KQLEEKVKAL EEGSRRTAEP TTAFESKCRI TVDDDDGGSA 240 SSGTDDGSSS SSSPTVEASI HGNTVLLKIC CKERRGLLVM ILSELEKQGL SIINTSVVPF 300 TDSCLNITIT AKARLALPVY YS*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 162 | 167 | ERKRRE |
2 | 163 | 168 | RKRREK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC099732 | 0.0 | AC099732.2 Oryza sativa Japonica Group chromosome 3 clone OJ1203D03, complete sequence. |
GenBank | AK288157 | 0.0 | AK288157.1 Oryza sativa Japonica Group cDNA, clone: J090001A02, full insert sequence. |
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |