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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os03g10770.1 |
Common Name | Os03g0205300, OSNPB_030205300 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 325aa MW: 34667.5 Da PI: 6.2514 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os03g10770.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 33.3 | 8.9e-11 | 248 | 288 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq
LOC_Os03g10770.1 248 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 288
9******************97.....8******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MEDSEAMAQL LGVQYFGNDQ EQQQPAAAAP PAMYWPAHDA ADQYYGSAPY CYMQQQQHYG 60 CYDGGAMVAG GDFFVPEEQL VADPSFMVDL NLEFEDQHGG DAGGAGSSAA AAAAATKMTP 120 ACKRKVEDHK DESCTDNVAR KKARSTAATV VQKKGNKNAQ SKKAQKGACS RSSNQKESNG 180 GGDGGNVQSS STNYLSDDDS LSLEMTSCSN VSSASKKSSL SSPATGHGGA KARAGRGAAT 240 DPQSLYARKR RERINERLKI LQNLIPNGTK VDISTMLEEA VHYVKFLQLQ IKLLSSDDMW 300 MFAPIAYNGV NVGLDLKISP PQQQ*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC123568 | 0.0 | AC123568.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1345H02, from chromosome 3, complete sequence. |
GenBank | AC132214 | 0.0 | AC132214.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence. |
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |