PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g06630.1
Common NameHSF08, HSF7, HSFA2D, OJ1607A12.12, Os03g0161900, OsJ_009160
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 380aa    MW: 43706.6 Da    PI: 8.902
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g06630.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind91.31.2e-28381482101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............XTTSEEEE CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............kekiweFk 82 
                       Fl+k+++++ d++++ ++sw + g+sfvv+d++ fa   Lp++Fkh+nf+SFvRQLn+Y   +++  +k+s +            +++ weF+
  LOC_Os03g06630.1  38 FLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYFLVRTNYLNKRS-HfyslrfqgfrkiDPDRWEFA 129
                       9**********************************************************888888777664.358888877765449****** PP

                       ESXXXXXXXXXXXXXXXXX CS
      HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                       ++ F +g+++ll+ ikr++
  LOC_Os03g06630.1 130 NDGFLRGQRHLLKMIKRRR 148
                       *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.7E-3334147IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-3034147IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.0E-4634147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-133861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-2638147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-137688IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-1389101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEKMMPGMVK EEWPPSSPEE GEAPRPMEGL HEVGPPPFLT KTFDLVADPA TDGVVSWGRA  60
GSSFVVWDPH VFAAVFLPRF FKHNNFSSFV RQLNTYFLVR TNYLNKRSHF YSLRFQGFRK  120
IDPDRWEFAN DGFLRGQRHL LKMIKRRRPL SYLPGSQQAL GTCLEVGQFG LDEEIDRLKR  180
DKNILLAEVV KLRHKQQSTK ANMRAMEERL QHAEQKQVQM MGFLARAMQN PDFFHQLIHQ  240
QDKMKGLEDT FSKKRTRSID IVPFLNPGEV SQGDQLESTL LFDPRPFAEL NDEPAKSELE  300
NLALNIQGLG KGKQDVNRTR NQPRNQASNE TELTDDFWEE LLNEGARDDA GIPGMERRRP  360
RYVDALAQKL GYLSNSSQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-213614718120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146LKMIKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.400210.0flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329768620.0
Expression AtlasQ8H7Y6-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g06630.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q8H7Y6
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g06630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444890.0AY344489.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649439.20.0PREDICTED: heat stress transcription factor A-2d
SwissprotQ8H7Y60.0HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A0D3FE470.0A0A0D3FE47_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GH510.0A0A0E0GH51_ORYNI; Uncharacterized protein
STRINGONIVA03G04400.10.0(Oryza nivara)
STRINGOBART03G04630.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-97heat shock transcription factor A6B
Publications ? help Back to Top
  1. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  2. Yokotani N, et al.
    Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis.
    Planta, 2008. 227(5): p. 957-67
    [PMID:18064488]
  3. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]
  4. Mittal D, et al.
    Binding affinities and interactions among different heat shock element types and heat shock factors in rice (Oryza sativa L.).
    FEBS J., 2011. 278(17): p. 3076-85
    [PMID:21729241]