|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
LOC_Os03g04310.2 |
Common Name | LOC4331538, Os03g0135700, OsJ_09317, OSNPB_030135700 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
Family |
bHLH |
Protein Properties |
Length: 354aa MW: 37760.5 Da PI: 4.621 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os03g04310.2 | genome | MSU | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 37 | 5.9e-12 | 185 | 227 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L
LOC_Os03g04310.2 185 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 227
79*********************66......****************99 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MELDEESFLD ELMSLRRDGS APWQAPPYPG GGGGGGGGGM MMSDLLFYGG DGGSAEARGG 60 MDASPFQELA SMAAPPPQHP HEEFNFDCLS EVCNPYRSCG AQLVPSEAAS QTQTQLTPLR 120 DAMVAEEETS GDKALLHGGG GSSSPTFMFG GGAGESSEMM AGIRGVGGGV HPRSKLHGTP 180 SKNLMAERRR RKRLNDRLSM LRSIVPKISK MDRTSILGDT IDYVKELTER IKTLEEEIGV 240 TPEELDLLNT MKDSSSGNNN EMLVRNSTKF DVENRGSGNT RIEICCPANP GVLLSTVSAL 300 EVLGLEIEQC VVSCFSDFGM QASCLQDGKR QVVSTDEIKQ TLFRSAGYGG RCL*
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 186 | 193 | ERRRRKRL |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK060029 | 0.0 | AK060029.1 Oryza sativa Japonica Group cDNA clone:006-303-F08, full insert sequence. |
Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]
|