 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
LOC_Os03g03900.1 |
Common Name | LOC4331508, NLP1, OJ1004C08.16, Os03g0131100, OsJ_09292 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
Family |
Nin-like |
Protein Properties |
Length: 943aa MW: 104617 Da PI: 5.6435 |
Description |
Nin-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os03g03900.1 | genome | MSU | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | RWP-RK | 89.4 | 2.8e-28 | 620 | 670 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
ek++sl+dl+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++
LOC_Os03g03900.1 620 EKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 670
799**********************************************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 943 aa
Download sequence Send
to blast |
MEQKPSPPPP PRSDEEEDGL MGCGMGGTGD IAGGDLDLME EFLLATPGFD LSEFWHPGAA 60 SPFSPLFDIG SSVTTLTTPA PAAGEDDRDE AEMPSRGGGG LEVSPAHRGW TFQTAPQEVA 120 VEPTVKERLR RALERIASQS QSQAQRGDGE LLVQVWVPTR IGDRQVLTTC GQPFWLDRRN 180 QRLANYRTVS MKYQFSADES ARADLGLPGR VFVGRVPEWT PDVRYFSTEE YPRVQHAQYF 240 DIRGSVALPV FEPRSRACLG VVELVMTTQK VNYSAEIENI CNALKEVDLR SSDVSSDPRS 300 KVVDASYRAI IPEIMDVLRA VCDTHNLPLA QTWIPCICQA KRGSRHSDES YKHCVSTVDE 360 ACYVRDCSVL GFHQACSEHH LFRGEGVVGR AFGTNEPCFS PDITTYSKTQ YPLSHHAKLF 420 GLRAAVAIQL RSVKTGSLDF VLEFFLPMKC INTEEQRAML NSLSNTIQQV CYTLRVVKPK 480 ELVNDGPFEI SQPTRPEFYA KSVHEDLDEL CSGINVPGRT TSLEASEEVS SWIASLVDAQ 540 NKGGKGEIDV DLPFGFSKQD DEGFSVTAGW HTSPVMAPDG SMFSGFKRHE DYDVKENTCS 600 SDPSNSNSDK AVEKRRTKTE KTVSLQDLRK HFAGSLKEAA KNLGVCPTTL KRICRQHGIN 660 RWPSRKIKKV GHSLKKLQMV IDSVHGPEGT VQLSSLYENF TKTTWSEREL QGDVHFPASE 720 QNFQLEPSVP DRPCEGRFTS HTSGSNSISP SCSQSSNSSL GCSSVPKTQQ QHGSAPQLAV 780 KEEISMDENQ CSTLIKSASH AEAELQMFVE ERPTMLFRSQ SQVLLSEHKP IENMSNVQKA 840 RSDSLKIKAI YGEERCIFRL QPSWGFQRLK EEIVKRFGIS QDTHVDLKYL DDESEWVLLT 900 CDADLLECID VYKSSSNQTV RILVNPSIQP LLNASFGQTG LS*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK100046 | 0.0 | AK100046.1 Oryza sativa Japonica Group cDNA clone:J013153P10, full insert sequence. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Schauser L,Wieloch W,Stougaard J
Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus. J. Mol. Evol., 2005. 60(2): p. 229-37 [PMID:15785851]
|