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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os03g02240.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
Trihelix |
Protein Properties |
Length: 726aa MW: 76494.9 Da PI: 7.1062 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os03g02240.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 98.9 | 4.4e-31 | 61 | 145 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+laL+++r+em+ ++r+++lk+plWeevs+k++e g++rs+k+C+ek+en+ k+yk++k+g+ +r ++ +t+++f++lea
LOC_Os03g02240.1 61 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRKLAEMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKTYRFFTELEA 145
8********************************************************************97..77778******985 PP
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2 | trihelix | 107.9 | 6.9e-34 | 418 | 503 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k ev+aLi++r+e+e+r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a
LOC_Os03g02240.1 418 RWPKAEVHALIQLRTELETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 503
8*********************************************************************8.99***********85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 726 aa
Download sequence Send
to blast |
MPPFSAAGGE GAPSPISSRP PPPEQAAAAA AEEQLNGSSL EHDGVLGGEE GDRGGSSAGN 60 RWPRQETLAL LKIRSEMDAA FREAALKGPL WEEVSRKLAE MGYKRSAKKC REKFENVDKY 120 YKRTKDGRAG RGDGKTYRFF TELEALHGAA AATARPPPVS LAPAPVAVAP PATPAGLSAL 180 RVHASPPPPP VKQHAAPPPP VMDVAACVMT MDDVSFSSGS DTEETAEEGG KRKRRGGGGI 240 GGGGGGGKAM RMFEGLMRQV MERQEAMQQR LLEAIERRDQ ERMIREEAWR RQEVARLARE 300 QDALAQERAI AASRDAAVIS FIQRVTGQSI AAVPPPPLQP TPVASAAPPP PPQHHHQQTP 360 PPIQVQPHHI MPMTPQPQLQ PPQPQSKEAN TVVRAAPPPQ EQHDTAASGG GGGASSSRWP 420 KAEVHALIQL RTELETRYQD SGPKGPLWED ISAGMRRLGY SRSSKRCKEK WENINKYFKK 480 VKESNKKRPE DSKTCPYYHQ LDALYRTKAA NAAAAASASP APATTTVLAP VPLSQTPPHV 540 DHGGSNGNGN GWASANNGGG GSSSGGMQTK ASNNGTATAG GLPVVSVAGG NGNGNGVAAT 600 TDNKGSKQVP VAKETAGQRQ PQPLAMNHNY GNDRMADDMD SDSMDDDDDD DEFDDDENDD 660 DIGGGKMQVQ YETSSHFQRP QLQNQNVVVG RPNASGGGGG GAPTTPAGPP PPAATSGTSF 720 LACVQ*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 234 | 247 | RGGGGIGGGGGGGK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK241800 | 0.0 | AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence. |