PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g52190.1 | ||||||||
Common Name | LOC4330791, OsJ_08458 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 335aa MW: 35276.9 Da PI: 6.7107 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.8 | 4.4e-14 | 136 | 187 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rr+h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++++k+L+ LOC_Os02g52190.1 136 QRRNHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVAGAINFVKELE 187 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.18E-15 | 134 | 191 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-17 | 134 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.885 | 135 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-14 | 136 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-11 | 136 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-10 | 141 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MALEAVVFPQ EHLSCAAAMY AAPPSSLGCG VDMDEFEENG GVVLQEEAGV AVHGGGGGGA 60 GGMMSLWVNA ATCARSIAAS GAVEEFWDER QYPVSSPPAA PTPAASGGGG GHAKAAARRR 120 RRRPKVVKNK EEAESQRRNH IAVERNRRRQ MNEYLAVLRS LMPPSYAQRG DQASIVAGAI 180 NFVKELEQLL QSLEAQKRRA EHAPPAPPFA GFFTFPQYST TVGDNNAAGS GAADGEGGCG 240 ARPGAADIEV AMAESHANVR VLAPRRPRQL LRMVVALQCL GLTVLHLNVT TTADHLALYS 300 FSLKMEDECR LSSVDEIAGA VNQMVTKIAG ECIS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 122 | RRRRRR |
2 | 137 | 147 | RNHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.55338 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A3ABJ9 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g52190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g52190 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004814 | 0.0 | AP004814.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0471A11. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623907.1 | 0.0 | transcription factor bHLH94 | ||||
TrEMBL | A0A0E0NL79 | 0.0 | A0A0E0NL79_ORYRU; Uncharacterized protein | ||||
TrEMBL | A3ABJ9 | 0.0 | A3ABJ9_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI02G34810.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10462 | 28 | 43 |
Representative plant | OGRP253 | 15 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 6e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g52190.1 |
Entrez Gene | 4330791 |