PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g49480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 388aa MW: 42474.3 Da PI: 8.483 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54 | 2.9e-17 | 190 | 239 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR +iN+++e LrellP+ ++K +Ka+ L +++eYI+ Lq LOC_Os02g49480.1 190 RSKHSATEQRRRTKINDRLEILRELLPHT----DQKRDKASFLSEVIEYIRFLQ 239 889*************************8....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-18 | 186 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-22 | 187 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.768 | 188 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.78E-16 | 190 | 243 | No hit | No description |
Pfam | PF00010 | 9.1E-15 | 190 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-12 | 194 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MQLFQGEEPA HDFLSLRAGG GSSSPPFQHR EEQHSSHSSR GYGMEIRRSL RPLDLAKQRG 60 RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRRSAF 120 AFAPALHGAR MENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGQTPYEA TRAEGRSSAS 180 SADQGPSTPR SKHSATEQRR RTKINDRLEI LRELLPHTDQ KRDKASFLSE VIEYIRFLQE 240 KVQKYEEADP ERNHEDSKSM PWAKVYYRSC WRNTKNTSQV QGEDLSPSTQ DMNNEQYGPK 300 HISAAQPALF NTQSVTSTTT SSSHMATGTP QNLEKNSTPS NQPPWLSMST MRQESEPGNK 360 MPNKHEKQTL HDENHSISSA YSQGSVP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.52592 | 0.0 | callus| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32978246 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g49480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g49480 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068228 | 0.0 | AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627558.1 | 0.0 | transcription factor BIM2 | ||||
Refseq | XP_015627559.1 | 0.0 | transcription factor BIM2 | ||||
Refseq | XP_015627560.1 | 0.0 | transcription factor BIM2 | ||||
TrEMBL | I1P3U1 | 0.0 | I1P3U1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0264700.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Representative plant | OGRP1360 | 17 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.3 | 2e-29 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g49480.1 |