PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g49250.1 | ||||||||
Common Name | Os02g0724400, OsJ_08202, OSNPB_020724400, P0685G12.28 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 282aa MW: 32224.5 Da PI: 9.7968 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.8 | 5.1e-13 | 105 | 149 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEde+l ++ k+ ++W ++ar+m+ gR++ +c+ rw+ +l LOC_Os02g49250.1 105 EWTAEEDERLRRLAKENLFRQWWKVAREMP-GRSGDSCRARWRHHL 149 7*****************************.***********9886 PP | |||||||
2 | Myb_DNA-binding | 22.8 | 2.1e-07 | 157 | 200 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T+ +de lv++++ Gg W++I+r + gRt ++rw +++ LOC_Os02g49250.1 157 PFTARDDEELVRLHRHTGGS-WRKISRSVY-GRTSAIMRDRWIQLR 200 79****************88.********9.****99999998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.424 | 98 | 153 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.18E-20 | 100 | 196 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-10 | 102 | 151 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-11 | 105 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.68E-10 | 105 | 149 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-17 | 105 | 157 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0016 | 154 | 202 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.852 | 155 | 204 | IPR017930 | Myb domain |
CDD | cd00167 | 0.00205 | 157 | 199 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-9 | 158 | 200 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 5.3E-6 | 158 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MEEEKEEMAI PAVPVDFFQL MIDGSSKQWR WGRRGESSNR SQWREERLLI EKMSMRKKMQ 60 LGRYPCSRCN QPRSRGGETS MATAAAAAAA AKCRCSRRRR LPEREWTAEE DERLRRLAKE 120 NLFRQWWKVA REMPGRSGDS CRARWRHHLA RDVYHRPFTA RDDEELVRLH RHTGGSWRKI 180 SRSVYGRTSA IMRDRWIQLR RSGLVPDAAK TAENAGCPPP AADDSEYMGS EAELKSPPPP 240 PQQQHPLADV LASSLDSCTL ASDATDPRDG ILALDFAFMS V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3osf_A | 1e-12 | 103 | 213 | 11 | 120 | MYB21 |
3osf_D | 1e-12 | 103 | 213 | 11 | 120 | MYB21 |
3osg_A | 1e-12 | 103 | 213 | 11 | 120 | MYB21 |
3osg_D | 1e-12 | 103 | 213 | 11 | 120 | MYB21 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6Z5L1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g49250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g49250 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005113 | 0.0 | AP005113.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0685G12. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624539.1 | 1e-144 | transcription factor MYB3R-5 | ||||
TrEMBL | Q6Z5L1 | 0.0 | Q6Z5L1_ORYSJ; Myb-like transcription factor-like | ||||
STRING | ORUFI02G32430.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22051 | 6 | 6 |
Representative plant | OGRP10428 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 2e-22 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g49250.1 |