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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g49230.4 | ||||||||
Common Name | OsJ_08199 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CO-like | ||||||||
Protein Properties | Length: 408aa MW: 44327.2 Da PI: 4.9028 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.1 | 1.4e-06 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ + e++ +C+++ lC +C + H+ Ht++ LOC_Os02g49230.4 4 LCDFCREQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45 7*****************************657888889876 PP | |||||||
2 | zf-B_box | 22.1 | 3.1e-07 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C+++ +++ C + ++ lC++C ++H g H++++ LOC_Os02g49230.4 47 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 89 7*****************************.5588889998876 PP | |||||||
3 | CCT | 64.5 | 3.2e-22 | 350 | 393 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ LOC_Os02g49230.4 350 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 393 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.8E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.31 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.32E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.058 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.54E-5 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.24 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.408 | 350 | 392 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.0E-17 | 350 | 392 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MDALCDFCRE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CVGQPAAVRC 60 LEENTSLCQN CDWNGHGAAS SAAGHKRQTI NCYSGCPSSA ELSRIWSFSM DIPTVAAEPN 120 CEEGINMMSI NDNDVNNHCG APEDGRLLDI ASTALMSDLP TGDKFKPLIG SSSGDGMNLL 180 PLNSDQPAEP VSTTPKAPCV TDKDMFNDGS VYGDFCVDDA DLTFENYEEL FGTSHVQTEQ 240 LFDDAGIDSY FEMKDVPADE SNEQPKPVQP ECSNVASVDS GMSNPAARAD SSHCIPGRQA 300 ISNISLSFSG LTGESSAGYF QDCGVSSMIL MGEPPWHPPG PESSSAGGSR DNALTRYKEK 360 KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LSQTRSY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 359 | 363 | KKKRR |
2 | 359 | 364 | KKKRRK |
3 | 360 | 364 | KKRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.3400 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116632475 | 0.0 | ||||
Expression Atlas | B9F2G3 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g49230.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g49230 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB001888 | 0.0 | AB001888.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:S3574. | |||
GenBank | AK071630 | 0.0 | AK071630.1 Oryza sativa Japonica Group cDNA clone:J023105D03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627427.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 isoform X1 | ||||
Refseq | XP_015627428.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 isoform X1 | ||||
Refseq | XP_025878658.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 isoform X3 | ||||
Refseq | XP_025878659.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 isoform X1 | ||||
Swissprot | Q9SSE5 | 1e-125 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | B9F2G3 | 0.0 | B9F2G3_ORYSJ; Uncharacterized protein | ||||
STRING | OS02T0724000-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 7e-93 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g49230.4 |