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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os02g48060.1 |
Common Name | LOC4330488, Os02g0710300, OSNPB_020710300 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 301aa MW: 30847.7 Da PI: 5.9077 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os02g48060.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 29.7 | 1.2e-09 | 214 | 255 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq
LOC_Os02g48060.1 214 AKNRRERISERLRILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 255
69******************97.....8******************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
GO:0048766 | Biological Process | root hair initiation |
GO:0005634 | Cellular Component | nucleus |
GO:0005739 | Cellular Component | mitochondrion |
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MRMALVRERA MVYGGGCDAE AFGGGFESSQ MGYGHDALLD IDAAALFGGY EAAASAGCAL 60 VQDGAAGWAG AGASSSVLAF DRAAQAEEAE CDAWIEAMDQ SYGAGGEAAP YRSTTAVAFD 120 AATGCFSLTE RATGGGGGAG GRQFGLLFPS TSGGGVSPER AAPAPAPRGS QKRAHAESSQ 180 AMSPSKKQCG AGRKAGKAKS APTTPTKDPQ SLAAKNRRER ISERLRILQE LVPNGTKVDL 240 VTMLEKAISY VKFLQLQVKV LATDEFWPAQ GGKAPEISQV KEALDAILSS SSPLMGQLMN 300 *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK109662 | 0.0 | AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence. |