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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os02g47660.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 362aa MW: 38638.6 Da PI: 7.3379 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os02g47660.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 28.3 | 3.1e-09 | 174 | 221 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq
LOC_Os02g47660.1 174 SHSLAERVRRERISERMRYLQELVPGC----NKVTGKAGMLDEIINYVQSLQ 221
8*************************9....677*****************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006351 | Biological Process | transcription, DNA-templated |
GO:0009637 | Biological Process | response to blue light |
GO:0009911 | Biological Process | positive regulation of flower development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 362 aa
Download sequence Send
to blast |
MAQCGGGDVS RHRKGHLDTV ESLCQGLLDD VMLDDDKCRA MFGYLQEWQD LASMCYGSLG 60 GEPPLAPEAS NGSGSSGGGG SFRKRRPDDA KGESNSICKR QRGKQQQQQQ PCHPDQMAAA 120 VGKGRPERAR PGAKKKAEVA SPKDSPATSA STVTAGQKTD YIHVRARRGQ ATDSHSLAER 180 VRRERISERM RYLQELVPGC NKVTGKAGML DEIINYVQSL QKQVEFLSMK IAASNPVVNF 240 NIVEDLFGRQ LSQAACNPAA LPAMALPMAQ VEPSCLQMSP LQQMQTSAGS SGYGLEMVVS 300 NQYSPPGGPM SVPAGASVEP CLNVNGAAGW DIGSHGLFSG FDAPFQSVQS DCLLDNLKME 360 M*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK119183 | 0.0 | AK119183.1 Oryza sativa Japonica Group cDNA clone:001-038-D03, full insert sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G34530.1 | 6e-36 | cryptochrome-interacting basic-helix-loop-helix 1 |