PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g47060.1
Common NameLOC4330420, Os02g0698800, OSNPB_020698800, P0459B01.19
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 507aa    MW: 51766.5 Da    PI: 6.1521
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g47060.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.7e-31239297259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  LOC_Os02g47060.1 239 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 297
                       699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109233299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-31233299IPR003657WRKY domain
SuperFamilySSF1182903.4E-26236299IPR003657WRKY domain
SMARTSM007741.4E-37238298IPR003657WRKY domain
PfamPF031061.1E-25240297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MCDYFLQRME GEQAAGDLAD IVLRAGGAAA AAVAGGGIPS TEWQLPPAEE EEEEPGLFPL  60
PPSSSDGSGM SGADAFGDPF AGLPDPFGGD YPSSGGAAAA ADFFDAVVAK AGFVDVGVLG  120
GGGGGGCDGG GVDGGGGGSS LLGMSKPILP RAAMQLPSVS PRAIRPYPVM AGDTVKLGAP  180
MAGGPCAFDG AAAAGLHMSS SPRGAVGGIK RRKNQARKVV CIPAPAAAGG RTSGEVVPSD  240
LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR TDPNMLVITY TSEHNHPWPT  300
QRNALAGSTR SHHAKNSSSN SSSSGASSAS KNNSSHSGYH HHHHQKPLVK AEPNDQSAAA  360
TTAATVPVKE EAAMVGTSSE ALAKTTQKSM EDAAAAASAT AAAVEHSDLM QQMFSQSYRP  420
MIPEAAAGGH HDDFFADLAE LESDPMSLIF SKEYMATNYK PAGDPAGKEM NAVDKGLDPA  480
YMLDWSSTTV VTRAGGSSFM QGEGGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-25213300280Disease resistance protein RRS1
5w3x_D3e-25213300280Disease resistance protein RRS1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329831230.0
Expression AtlasQ6Z8E9-
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g47060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g47060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731000.0AK073100.1 Oryza sativa Japonica Group cDNA clone:J033016K09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624748.10.0probable WRKY transcription factor 14
SwissprotO647471e-69WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLQ6Z8E90.0Q6Z8E9_ORYSJ; Os02g0698800 protein
STRINGOS02T0698800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.19e-67WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]