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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os02g43560.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
WRKY |
Protein Properties |
Length: 190aa MW: 20495.6 Da PI: 8.492 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os02g43560.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 35.3 | 2.3e-11 | 163 | 187 | 1 | 27 |
---SS-EEEEEEE--TT-SS-EEEEEE CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrC 27
ldDgy+WrKYGqK+vk+s +pr Y C
LOC_Os02g43560.1 163 LDDGYKWRKYGQKVVKNSLHPR--YIC 187
59*******************9..555 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 190 aa
Download sequence Send
to blast |
MHTCMEGGGQ LGTCLPNFYL LPDHHGMPLP PPLQLPCHPK LLQMPFDQED QPGIHGVMLS 60 SDHCGLYPLP ALPLSNSAAA AAATVALGKH SAAAGSMPNI GGAEEVATTV TKAGNESTTC 120 NGSTTWWRGS TMAAMGEKGK MKIRRKMREP RFCFQTRSEV DVLDDGYKWR KYGQKVVKNS 180 LHPRYICST*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK072906 | 0.0 | AK072906.1 Oryza sativa Japonica Group cDNA clone:J023147K18, full insert sequence. |
Publications
? help Back to Top |
- Yu Y, et al.
MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering. Plant Sci., 2013. 212: p. 1-9 [PMID:24094048] - Yang L, et al.
PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa. Sci Rep, 2016. 6: p. 18643 [PMID:26819184] - Li W,Wang H,Yu D
Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] - Han Y, et al.
WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis. Plant Mol. Biol., 2019. 99(1-2): p. 149-159 [PMID:30617455]
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