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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os02g43300.1 |
Common Name | LOC4330152, P0048B08.5, P0519A12.36 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
Trihelix |
Protein Properties |
Length: 629aa MW: 67740.1 Da PI: 4.597 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os02g43300.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 93.2 | 2.5e-29 | 88 | 172 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+++e+laLi++r+em+ ++r++ lk+p Wee s++++e g++rs k+Ckek+en+ k+yk++keg+ +r++++s +++f+qlea
LOC_Os02g43300.1 88 RWPREETLALIRIRSEMDAAFRNATLKAPVWEELSRRLAELGYQRSGKKCKEKFENVDKYYKRTKEGRTGRQDGKS--YRFFSQLEA 172
8*********************************************************************866665..*******85 PP
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2 | trihelix | 108 | 6.4e-34 | 395 | 480 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k+ev+aLi++r e+ee++++ k+plWee+++ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
LOC_Os02g43300.1 395 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 480
8********************************************************************97.99***********85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010192 | Biological Process | mucilage biosynthetic process |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 629 aa
Download sequence Send
to blast |
MQHPQGAGDP PYGVVPAPPT MAAAFDLPPV TTPAPAAPSD VLLPTQPQVS GPEEFPAAAV 60 NSNDDDMMMV DDVVVAGGVG GSGSTGNRWP REETLALIRI RSEMDAAFRN ATLKAPVWEE 120 LSRRLAELGY QRSGKKCKEK FENVDKYYKR TKEGRTGRQD GKSYRFFSQL EALHAAAPPP 180 PPQQRQGMPV EDPQPLAMAW MMLPGAADLG FLSMSSESES DDESDEEEEE EEAVAPGGGG 240 REGLGDDGDG DGEGGSSTRK LMAMFEGMMR QVTEKQDAMQ RVFLETLEKW EAERTEREEA 300 WRRKEVARIN REREQLSKER AAAASRDAAL IAFLQRVGGA GGEPVRLSPS SAGATRHDAA 360 AAGLQLVPVP APRAKAEDAW AAAGGDGSGT TAPSRWPKEE VQALIDLRME KEEQYNDMGP 420 KGPLWEEIAA GMQRIGYNRS AKRCKEKWEN INKYFKKVKE SNKRRPEDSK TCPYFHQLDA 480 IYRKKHFAGR GGGGGGVTIA ASHSSLAIVT VSEQDNPSQR ELEGKSSNDV GNVQLAVPLL 540 VHNAPDKKVE GSEGEPNVTA AAEETDSDEM CGEYTDDGDD DDKMQYKIEF QKPTAGGGGD 600 GNDAPVPATT AAATSSAPTS NTSFLAVQ*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK111742 | 0.0 | AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence. |