PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os02g39140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 301aa MW: 30722.1 Da PI: 8.3766 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 236 | 281 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Ave+Ik Lq LOC_Os02g39140.1 236 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 281 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.723 | 230 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-16 | 233 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.55E-12 | 234 | 285 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.3E-15 | 235 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 236 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-10 | 236 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MMRRFLPVGG GGGGGVEPSS SSTTPQRGEA EAAGLRFGGG DISLGPHGGG GGGGGGGGGH 60 GHQLQDGSVD LLARHSSSPA GFFSNLMASN GFPGSKGGGG SGAEAHHHPS MAGSGSGSSS 120 GGRKMKSQLS FTAGPPHLSH IAEDGAFPDR AGAEASVPRT FSAGGSSGGG GFSIVGPWEE 180 SRDIISTLGG YESQFGGMAS TSALEMAGMD RYLQLQHDQV PFKVRAKRGC ATHPRSIAER 240 ERRTRISEKL RKLQELVPNM DKQTSTADML DLAVEHIKGL QSQLQALKHE QEKCTCCSRP 300 * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.49337 | 0.0 | leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32996042 | 0.0 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os02g39140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os02g39140 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK110833 | 0.0 | AK110833.1 Oryza sativa Japonica Group cDNA clone:002-172-A09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625725.1 | 0.0 | transcription factor bHLH128 isoform X1 | ||||
Swissprot | Q8H102 | 8e-56 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A0E0NHG9 | 0.0 | A0A0E0NHG9_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G24640.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11531 | 31 | 41 |
Representative plant | OGRP511 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G05805.1 | 1e-47 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os02g39140.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|