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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os02g35660.1 |
Common Name | LOC4329698, Os02g0564700, OsJ_07173, OSNPB_020564700, P0020C11.18 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 525aa MW: 54719.1 Da PI: 5.1029 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os02g35660.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 38.4 | 2.2e-12 | 325 | 370 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h+++Er RR++i +++ L+el+P++ K +Ka++L + ++Y+k Lq
LOC_Os02g35660.1 325 HSIAERLRREKISDRMKDLQELVPNS-----NKTNKASMLDEIIDYVKFLQ 370
99***********************7.....5******************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
GO:0005634 | Cellular Component | nucleus |
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 525 aa
Download sequence Send
to blast |
MGGFAYPFTP SPAWSRDAVF AGSPWAAGGV SSLADALVSY GAVDDEEAAF LGKTAASSPS 60 TARLHEQQQL LLEAELLRHG DGLGFAAMDD DGGAAMLGAL EPCAMPLTDS GGPPVICSSS 120 SNDSSGSEHS AAMPAGGGFL VGEQQQHVPP AAYAAGGVLP SMAAGEETPQ SFGFGSLFNG 180 DLLQEATVSK YHHHQQQQQL GVVPSSQPHH LNDDIDFNTG KLMSFASGQQ HVTPSIDSLQ 240 IDQKEFSSGL HHLNLSSLIS GPLASFNATQ SHRQPAEACG GKNGGAAPFV NLSEVLPKGN 300 GSGSAGNGAP KPRVRARRGQ ATDPHSIAER LRREKISDRM KDLQELVPNS NKTNKASMLD 360 EIIDYVKFLQ LQVKVLSMSR LGAAEAVVPL LTETQTESPG FLLSPRSSSG ERQAGAGAVT 420 GGLPGDQPEL LDGGAMFEQE VVKLMEDNMT TAMQYLQSKG LCLMPVALAS AISAQKGTSS 480 AAVRPEKKKN GDGDGGGDEE DVKGEFDAPR RPPVGRPKEM RSRV*
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Function -- GeneRIF ? help
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- The chemistry and physiological expression of PTF1 in phosphte-starved O. sativa are reported.
[PMID: 16006597]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK241924 | 0.0 | AK241924.1 Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence. |