PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g34320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 311aa MW: 31814.8 Da PI: 5.8205 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.3 | 2.8e-13 | 92 | 141 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+h +Er RR++i++ f Lr+l+P++ K +Ka+i+ +A+ +I+sL+ LOC_Os02g34320.1 92 ERMHIFAERERRRKIKNMFTDLRDLVPSL----TNKADKATIVGEAISFIRSLE 141 578999**********************9....68*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-16 | 87 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.08E-13 | 89 | 145 | No hit | No description |
PROSITE profile | PS50888 | 14.919 | 90 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-10 | 93 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-16 | 94 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-11 | 96 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 4.2E-5 | 236 | 288 | No hit | No description |
PROSITE profile | PS51671 | 9.338 | 239 | 310 | IPR002912 | ACT domain |
CDD | cd04873 | 0.00288 | 240 | 301 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MAQEGTSSNA PPAAASMGSG DGDNKEGTGE SGNNQLLLPA IAASADKGKG VVAGTGNVDA 60 KGKTTAMAPA ASSTNAPNNQ GGGGGGGGRS RERMHIFAER ERRRKIKNMF TDLRDLVPSL 120 TNKADKATIV GEAISFIRSL EETVADLERR KRERNSLAAR CARLGLGGSS SSSAPPPPPP 180 PAAADDTAAV MPPAPAVPPP DAAAVTAGPE PAPAPAPGTL MVWSGPSVVL NLCGGDQAFI 240 NVSVARRPGV LTMIVDVLER HSIDVVTAQI ASDLSRSLFT IHTSVDRERG MFMDTATAEE 300 IYQLAVSEIM * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g34320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g34320 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005611 | 0.0 | AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878857.1 | 0.0 | transcription factor bHLH95 | ||||
TrEMBL | B8AJC8 | 0.0 | B8AJC8_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI02G21070.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2005 | 36 | 91 |
Representative plant | OGRP1226 | 15 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 2e-16 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g34320.1 |