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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os02g33770.1 |
Common Name | LOC4329598, Os02g0542400, OsJ_07059, OSNPB_020542400, P0472F10.15 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
Trihelix |
Protein Properties |
Length: 411aa MW: 46666.8 Da PI: 6.7534 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os02g33770.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 63.3 | 5.7e-20 | 96 | 194 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstc 79
+W +v++L+ a+ +++e++ + ++k++W+ vs++m ergf +sp+qC++k+++lnkryk+++e+ +++t ++++++
LOC_Os02g33770.1 96 KWISGMVKLLVSAVAYIDEDVDMDYgtgsaarrkhamlKRKGKWRLVSAAMTERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGTaCQVVEHP 188
799************8888877542334467778888899*******************************************9548888777 PP
trihelix 80 pyfdql 85
+++ +
LOC_Os02g33770.1 189 ELLEGM 194
776655 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 411 aa
Download sequence Send
to blast |
MEGNLPPRGA LVHGHGGGVG AFDLEATMQP PPPFHFAQDP HLHHHQGMVP VRGNPMLDLG 60 NVVKTSPSDE EDVDDGHHHG GGGGSGKEAS QWHRVKWISG MVKLLVSAVA YIDEDVDMDY 120 GTGSAARRKH AMLKRKGKWR LVSAAMTERG FPVSPQQCED KFNDLNKRYK RMTEILGRGT 180 ACQVVEHPEL LEGMRLSGKL KEEARKHLNS KHLHYEEMCS YHNRNKMCLF DDPALQKSLR 240 LALRSGEEHA KKNPFGYDDE DFSDDDDEDE EFDDLEVSAE DHHHGIHGAK RLKHDQEETH 300 FGSNLSEVAV IDMNKMLSEG SGGPTAEKSP STPGMRDIRL EKRRLKIKAQ MLKIEQKHFK 360 WLRFSKEKDR ELEKMRLENE KMKLENERLE LELKLKEIEM GIKPKKIFSD *
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Os.8837 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP004877 | 0.0 | AP004877.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0472F10. |
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G21200.1 | 1e-63 | sequence-specific DNA binding transcription factors |