PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g26780.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 560aa    MW: 65420.9 Da    PI: 7.0953
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g26780.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1509.6e-1631103273
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekd 73 
                       fYn+YAk  GFs+rk+  ++   +  ++ r+++Cs+eg+r++   +  +k+r++ra tr+gCka ++++++k+
  LOC_Os02g26780.1  31 FYNRYAKGKGFSIRKNFARRDPVTADVIFRQYTCSREGYRRDVYMDiGNKSREPRALTRCGCKAIFEIRLDKK 103
                       ******************************************99997889999***************99874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-1431103IPR004330FAR1 DNA binding domain
PfamPF105515.3E-29233318IPR018289MULE transposase domain
PROSITE profilePS509669.137411462IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MADNFSSLEE EEEYATFMAM RFKSENDGFT FYNRYAKGKG FSIRKNFARR DPVTADVIFR  60
QYTCSREGYR RDVYMDIGNK SREPRALTRC GCKAIFEIRL DKKQGDCHSL AKSDEVPFLR  120
SHRNISIAQK ANVVELREVG LRQHQVMDVM ERRHGGFEST GFVSRDLYNF FVRQKKKQIL  180
GGDADHVIKY MQARQKDDME YFFEYETDEA GRLKRLFWAD PQSRIDYDAF GDVVVFDSTY  240
RVNKYNLPFI PFVGVNHHGS TVIFACAIVA DEKVASYEWI LKQFLDCMGQ KHPRGLITDG  300
DNSMRRAISS VMPHSEHRAL IHSTYGPEEF ENKWVEFKDK HKVGEDNQWL VRMYNLRKKW  360
AAAYLKDASL IEKEVARIYT PAIFKKVKFE IIKSMDWEVI DFIDEDTVVK YVMCLKENNE  420
KLKILNCTYE ESFLKTMSCP CMKLDCESLP CQHMFAVLFY LKMDAIPESC IVRRWTVKAK  480
SVFPSDRYGE TFSWSDQMER YRMLRSFGSE VLMKCSISEE CTLKVMEMLE KLDLETEDCD  540
GSSEGSTAKK IERFFGEAC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g26780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g26780
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048500.0AP004850.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1342_D02.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615737.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0E0EZP90.0A0A0E0EZP9_9ORYZ; Uncharacterized protein
STRINGOS03T0164400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-68FAR1-related sequence 5