PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g23823.1 | ||||||||
Common Name | LOC4329217, Os02g0433600, OsJ_06533, OSJNBa0065F08.2, OSNPB_020433600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 344aa MW: 37814.8 Da PI: 5.9933 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34 | 5.3e-11 | 40 | 89 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f+eL + l ++ ++++Ka+iL A++ +k+L LOC_Os02g23823.1 40 RKVQKADREKMRRDRLNEQFQELGSTLDPD----RPRNDKATILSDAIQMLKDL 89 5677889********************997....799***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.224 | 39 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-13 | 39 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.30E-7 | 40 | 93 | No hit | No description |
SuperFamily | SSF47459 | 6.8E-14 | 40 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.4E-9 | 40 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.4E-8 | 45 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MDPRSSQAQE DGFFHPRDGA CPADSSGKTE CKTQGSIATR KVQKADREKM RRDRLNEQFQ 60 ELGSTLDPDR PRNDKATILS DAIQMLKDLT SQVNKLKAEY TSLSEEAREL TQEKNELRDE 120 KVSLKFEVDN LNTQYQQRMR VLYPWTGMEP SVVIGPPLPY PFSVPVPVPV PIPSGAVPMH 180 PQLQAYPYFR NQTSGTVSNP CTPYMAYTQP IHPPTDQLSN QFSAPVQHSS SNRSHSMAQD 240 SRSKSSALQQ VSCRGKHDDF DDVATDLELK TPGSSAPLQS EIANKDSSSD LKKKQQFIQE 300 TKGSSLTEGS SSSSRCSSSG PPDVSNSIEG GSVADDQRST VQT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.52897 | 0.0 | flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32979814 | 0.0 | ||||
Expression Atlas | Q67U21 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g23823.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g23823 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069790 | 0.0 | AK069790.1 Oryza sativa Japonica Group cDNA clone:J023031O20, full insert sequence. | |||
GenBank | AK103986 | 0.0 | AK103986.1 Oryza sativa Japonica Group cDNA clone:001-017-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626280.1 | 0.0 | transcription factor bHLH121 isoform X1 | ||||
TrEMBL | Q67U21 | 0.0 | Q67U21_ORYSJ; BHLH transcription factor | ||||
STRING | OS02T0433600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11767 | 25 | 29 |
Representative plant | OGRP3401 | 14 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 7e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g23823.1 |
Entrez Gene | 4329217 |