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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os02g13670.1 |
Common Name | OSJNBb0035N08.33 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 211aa MW: 21955.6 Da PI: 10.5342 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os02g13670.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 18.3 | 4.2e-06 | 20 | 93 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...........................TTS-STCHHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPkas........................kapskKlsKaeiLekAveYIksLq 55
+ Er RR+++N+ ++ L +l+ +a+ ++ + + + L A eYI++ q
LOC_Os02g13670.1 20 KTTERIRREQMNKLYSHLDSLVRSAPptvnsipshsnsnskyhqrklrilGGAAAATTRPDRLGVAAEYIRQTQ 93
568*********************66699999999999999999999997667777888888888888888866 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex |
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 211 aa
Download sequence Send
to blast |
MEIPPPSAGG GGGGGKPDRK TTERIRREQM NKLYSHLDSL VRSAPPTVNS IPSHSNSNSK 60 YHQRKLRILG GAAAATTRPD RLGVAAEYIR QTQERVDMLR EKKRELTGGG GGGSSSSSGA 120 GAATAAAPEV EVQHLGSGLH AILFTGAPPT DGASFHRAVR AVEDAGGQVQ NAHFSVAGAK 180 AVYTIHAMIG DGYGGIERVV QRLKEAIRSN *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005756 | 0.0 | AP005756.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08. |
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |