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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os02g12820.1 |
Common Name | B1131G07.17 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 644aa MW: 66924.6 Da PI: 9.7567 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os02g12820.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 35.5 | 1.8e-11 | 427 | 470 | 5 | 53 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
h + ErrRR+r+N++fe Lr llP+ K +Ka++L k+ eY++
LOC_Os02g12820.1 427 HMISERRRRERLNESFEHLRGLLPPG-----SKKDKATVLAKTLEYMNL 470
8899********************95.....599************975 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 644 aa
Download sequence Send
to blast |
MDTIFVLGQE SRQRILHRAA ARLPGCAYVC AWAPLPLVAA AGLHHQRPSS GGAAGAARLL 60 YCVDGWLSGG EDGGGCVRAL FDAYRGSVCG AVTGCVPGWA YVGGGGGVFM ELSELELVAS 120 ASLPVQQSFY QEAGIKMAAF MGCESGEIEV GFSTAPAENY GGGGGGGSLQ ASVEQVFSED 180 FFQQSLLEEL LQLPPTRPSS SSSSLVGSPA DGAASTSLLR TMTPMMASSS ATPSPRELAA 240 QVATTTTTTT TPSSSSRLHP RPPAPHHVHV SPFSRHGGVG GSGVLHFPSA EADDAAMAQA 300 MLDVISSPST SSSAAALHAP WSSVKHRAQI IRSPRRGTPT TTAFRAYNAA LAPRAAASRR 360 PPGAPGQRMI KMGFSILRRM HMVRCSQERA AAAAAAASAA AAQRSGGGDD EDATAAPPPP 420 TSSQLHHMIS ERRRRERLNE SFEHLRGLLP PGSKKDKATV LAKTLEYMNL LIAQISELEA 480 KNRALQTQIH QRANGSSSSR SSMIRTVNEV HHHHNHQWLA VAAAAGGSPE RVQVHVIGGG 540 DHDGGASASS SSSAPEVTVR VAVRAPERGG ADVSELVLRV LALLKAMGGF TVVAVDARQP 600 GGGGGNGVAQ ASLTLRATVR MLTLLKRMFR AKNHSSSDQI IRL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005797 | 0.0 | AP005797.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1131G07. |
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |