PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g08440.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 217aa MW: 23414.9 Da PI: 9.8095 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.1 | 2.3e-30 | 60 | 119 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k++++pr+Y+rC++a Cpvkkkv+rsaed+++++ tYegeHnh LOC_Os02g08440.4 60 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSAEDNTILVATYEGEHNHG 119 58***************************99****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 26.199 | 55 | 121 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-29 | 59 | 121 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-26 | 59 | 121 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.4E-35 | 60 | 120 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-25 | 61 | 118 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0002238 | Biological Process | response to molecule of fungal origin | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009623 | Biological Process | response to parasitic fungus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009685 | Biological Process | gibberellin metabolic process | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MDPWISTQPS LSLDLRVGLP ATAAVAMVKP KPCKRIREEC KPKISKLYVH ADPSDLSLVV 60 KDGYQWRKYG QKVTKDNPCP RAYFRCSFAP ACPVKKKVQR SAEDNTILVA TYEGEHNHGQ 120 PPPPLQSAAQ NSDGSGKSAG KPPHAPAAAP PAPVVPHRQH EPVVVNGEQQ AAAASEMIRR 180 NLAEQMAMTL TRDPSFKAAL VTALSGRILE LSPTKD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-24 | 45 | 122 | 1 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.12032 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116641624 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in aleurone cells (PubMed:15047897). In seeds, predominantly present in the plumule, radicle and scutellum of the embryo. Expressed in roots, stems, young leaves and spikelets (PubMed:16919842). {ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:16919842}. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in aleurone cells (PubMed:15047897, PubMed:16623886). In seeds, predominantly present in the plumule, radicle and scutellum of the embryo (PubMed:16623886). Expressed in roots, stems, young leaves and spikelets (PubMed:16919842). {ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:16623886, ECO:0000269|PubMed:16919842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:18175928, PubMed:15047897, PubMed:16623886). Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1 (PubMed:15047897, PubMed:16623886, PubMed:19199048). Regulates, probably indirectly, the activation of defense-related genes such as GF14E during defense response (PubMed:18175928, PubMed:26851365, PubMed:26467468). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Confers resistance to the virulent bacterial pathogen Xoo 13751, probably via the regulation of NPR1 and PR1b defense signaling pathways (PubMed:16919842). {ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:16623886, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:18175928, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:26467468, ECO:0000269|PubMed:26851365}. | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1 (PubMed:15047897). Regulates, probably indirectly, the activation of defense-related genes such as GF14E during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). Confers resistance to the virulent bacterial pathogen X.oryzae pv. oryzae (Xoo) 13751, probably via the regulation of NPR1 and PR1b defense signaling pathways (PubMed:16919842). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:16919842}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g08440.4 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide and fungal cerebroside elicitors) and pathogen infection (e.g. the compatible pathogenic fungus M.grisea race 007, M.grisea crabgrass BR29). Accumulates in response to M.oryzae (By similarity). Triggered by defense signaling molecules, such as salicylic acid (SA), methyl jasmonate (MeJA), 1-aminocyclo-propane-1-carboxylic acid (ACC), wounding and pathogen infection (e.g. X.oryzae) (PubMed:16919842). Repressed by gibberellic acid (GA) (at protein level) (PubMed:15047897). Induced by abscisic acid (ABA) in aleurone cells, roots and leaves (PubMed:25110688). Accumulates in response to uniconazole, a GA biosynthesis inhibitor. Triggered strongly by cold in leaves, stems and developing spikes, but moderately by drought and salt stresses (By similarity). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide and fungal cerebroside elicitors) and pathogen infection (e.g. the compatible pathogenic fungus M.grisea race 007, M. grisea crabgrass BR29) (PubMed:18175928, PubMed:19772648, PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). Triggered by defense signaling molecules, such as salicylic acid (SA), methyl jasmonate (MeJA), 1-aminocyclo-propane-1-carboxylic acid (ACC), wounding and pathogen infection (e.g. X.oryzae) (PubMed:16919842). Repressed by gibberellic acid (GA) (at protein level) (PubMed:15047897, PubMed:19199048). Induced by abscisic acid (ABA) in aleurone cells, roots and leaves (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a GA biosynthesis inhibitor (PubMed:16623886). Triggered strongly by cold in leaves, stems and developing spikes, but moderately by drought and salt stresses (PubMed:14645724, PubMed:23495849). {ECO:0000269|PubMed:14645724, ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:16623886, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:18175928, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:19772648, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973, ECO:0000269|PubMed:23495849}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g08440 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB190817 | 0.0 | AB190817.1 Oryza sativa Japonica Group OsWRKY71 mRNA for transcription factor OsWRKY71, complete cds. | |||
GenBank | AY676927 | 0.0 | AY676927.1 Oryza sativa (indica cultivar-group) transcription factor WRKY71 (WRKY71) mRNA, complete cds. | |||
GenBank | CT830591 | 0.0 | CT830591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124O19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627417.1 | 1e-134 | WRKY transcription factor WRKY71 | ||||
Swissprot | Q6IEL0 | 1e-135 | WRK71_ORYSI; WRKY transcription factor WRKY71 | ||||
Swissprot | Q6QHD1 | 1e-135 | WRK71_ORYSJ; WRKY transcription factor WRKY71 | ||||
TrEMBL | I1NXW4 | 1e-133 | I1NXW4_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0057000.1 | 1e-133 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.2 | 4e-49 | WRKY DNA-binding protein 18 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g08440.4 |