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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os02g07800.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
Trihelix |
Protein Properties |
Length: 436aa MW: 46239.9 Da PI: 4.1757 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os02g07800.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 28.9 | 3e-09 | 71 | 149 | 1 | 71 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkr 71
+Wt e+laL++ + +++ +r+ ++ ++W+ v++++ r rg r + +C+ +we l+ +y ++++e ++
LOC_Os02g07800.1 71 EWTPAETLALVAEVAAVDDGWSRSVSAFQKWAIVAENLaasrgraaRGRGRGRAASECRRRWEALAAEYGVVRRWEVRG 149
5*******************************************9999999**********************999876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 436 aa
Download sequence Send
to blast |
MAMDPDAAEW PCIIQALPAL PPSPSSTGVP RLPTMVQALP AATDPPPAAA RLRRGAEPPS 60 PRRTRSGGAP EWTPAETLAL VAEVAAVDDG WSRSVSAFQK WAIVAENLAA SRGRAARGRG 120 RGRAASECRR RWEALAAEYG VVRRWEVRGA GGYWRMSAAA RRKAGLPADF DAEVYGAMEA 180 LTLVEEALLA DATAGAGGAE IGEKSAAAAE VGEGDEVEAG EEDGNGDRGE VGEEDEGEVG 240 EDGEEEDGNE MVEVEDDGNA DDKDAQPDGG NAAASDDLGM QGQHMSSSLN SISTYWYLSK 300 DEVCETGANN EGKKSQTDAC ELANKLQENA QHIHMLLKEE AGENENHNLA ISSDSMETTR 360 QKGDELIKSL GGLVSYLNQF TDLIKENGFE NVVGLWQTLL PALASPFLSA IVYFSVWQSA 420 VLGRFSALYS RIPGF*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 113 | 123 | RAARGRGRGRA |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005772 | 0.0 | AP005772.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0073A21. |
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G31270.1 | 2e-11 | sequence-specific DNA binding transcription factors |