PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os02g01380.1 | ||||||||
Common Name | Os02g0104500, OSNPB_020104500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 371aa MW: 40503.2 Da PI: 5.1785 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 102 | 4.5e-32 | 184 | 268 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev aLi++r+ +e+r+++ lk+plWeevs++m++ g++r++k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+ LOC_Os02g01380.1 184 RWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 268 8********************************************************************98.99999*******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.073 | 177 | 241 | IPR017877 | Myb-like domain |
CDD | cd12203 | 5.39E-30 | 183 | 248 | No hit | No description |
Pfam | PF13837 | 1.3E-23 | 183 | 270 | No hit | No description |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 371 aa Download sequence Send to blast |
MLAPPMADLP DAAAANPPHL NTSETSAGED AHAVVQPQPQ TQQPSGADAA RRKRKRRRQE 60 QLSASASFFE RLVQRLMEHQ ESLHRQFLDT MERRERERAA RDEAWRRQEA DKFAREAAAR 120 AQDRASAAAR ESAIIAYLEK ISGETITLPP PAANPAPGAD EQDGVGKEVV AYDGEGSLQL 180 SSSRWPKHEV EALIRVRTGL EDRFQEPGLK GPLWEEVSAR MAAAGYRRNA KRCKEKWENI 240 NKYFRKAKES GKKRPAHAKT CPYFDELDRL YSRSGSGGGG GSSSAGGNGG EEAKGSSELL 300 DAVVKYPDVR CAPPGFPFDG EQNEEGRTKD DGDEAHHDGD GDGDEEDVGV GVGRATDDHD 360 DQVDESHDGH * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 50 | 55 | RRKRKR |
2 | 51 | 56 | RKRKRR |
3 | 51 | 57 | RKRKRRR |
4 | 52 | 57 | KRKRRR |
5 | 53 | 57 | RKRRR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.10797 | 0.0 | callus| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 37989686 | 0.0 | ||||
Expression Atlas | A0A0P0VDM9 | - |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00651 | PBM | 25215497 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os02g01380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os02g01380 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP004049 | 0.0 | AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06. | |||
GenBank | AP006720 | 0.0 | AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879174.1 | 0.0 | trihelix transcription factor GTL1 | ||||
TrEMBL | A0A0P0VDM9 | 0.0 | A0A0P0VDM9_ORYSJ; Os02g0104500 protein (Fragment) | ||||
TrEMBL | Q6YPG7 | 0.0 | Q6YPG7_ORYSJ; Os02g0104500 protein | ||||
STRING | OS02T0104500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6399 | 35 | 47 | Representative plant | OGRP663 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76890.2 | 3e-41 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os02g01380.1 |