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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os01g70310.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 382aa MW: 39776.8 Da PI: 6.1432 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os01g70310.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 36.5 | 8.7e-12 | 196 | 238 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L
LOC_Os01g70310.1 196 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 238
79*********************66......****************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MDEAEAAAAA AKMDELAGGG GGGGGDWSYL AADALAAASF TAFPFHHHHH HHHRDVLSAS 60 TPSSLLLNMD AATAAAMFDF QAAFPSSSVP PPPPTTTAAL PPFHDFASSN PFDDAPPPFL 120 APPGQKLGFL GPPGGAFGGG MGWDDDDEIE QSVDASSMGV SASLENAAPV AAGGGGGGGG 180 GGGRGKKKGM PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ 240 RINDLHNELE SAPSSSLTGP SSASFHPSTP TLQTFPGRVK EELCPTSFPS PSGQQATVEV 300 RMREGHAVNI HMFCARRPGI LMSTLRALDS LGLGIEQAVI SCFNGFAMDV FRAEQCRDGP 360 GLGPEEIKTV LLHSAGLQNA M*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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|
No. |
Start |
End |
Sequence |
1 | 185 | 203 | KKKGMPAKNLMAERRRRKK |
2 | 197 | 204 | ERRRRKKL |
Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Os.13595 | 0.0 | callus| flower| panicle| root| seed| stem |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK102594 | 0.0 | AK102594.1 Oryza sativa Japonica Group cDNA clone:J033098G23, full insert sequence. |