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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os01g70230.1 |
Common Name | P0482D04.22 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
Trihelix |
Protein Properties |
Length: 299aa MW: 31551.3 Da PI: 8.0911 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os01g70230.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 75.5 | 8.8e-24 | 23 | 94 | 1 | 71 |
trihelix 1 rWtkqevlaLiearremeerlrrgklk.kplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
rWt++e+l+L++arr me+r rr+ + +W++vs ++r++g+er+p qC+++w nl+++ kki ++ek+
LOC_Os01g70230.1 23 RWTRHETLVLLQARRAMEHRGRRSPQPvRLKWAAVSTYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEKNL 94
8**********************97764889**************************************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MSGAANATSP AAGAGTPRSR LPRWTRHETL VLLQARRAME HRGRRSPQPV RLKWAAVSTY 60 CRRHGVERGP MQCRKRWGNL SWDLKKIVAW EKNLAAVVSG AGDNAVAAGE GEGEAPPPPR 120 LESFWDMRGE QRRARQLPSS FDREVYDALV GGHGAAPPSD FGEDLADGDG VDADELPPPP 180 LMVMPISATV SAKRGGAASD KNSTSQHDGG GGGGLKDSEA TYGAGVGGEE GTTTATATAT 240 TTSIGRQVIE ALERGNRMLG DQLEAQRAAW DAEREQRVAL LAAVDKLAGA VCRIADKL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP003262 | 0.0 | AP003262.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0482D04. |
GenBank | AP004332 | 0.0 | AP004332.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16. |
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |