![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os01g69910.1 | ||||||||
Common Name | B1455F06.32-1, LOC4327253, Os01g0923600, OsJ_04592, OSNPB_010923600, P0592G05.16-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 879aa MW: 99356 Da PI: 7.6027 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 174.7 | 1.2e-54 | 12 | 130 | 1 | 118 |
CG-1 1 llke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 l++e k+rwlk++e+++iL+n++++ +t++++++p+sg+++L+nr+++ryfr+DGy+w+kkk+gkt+ E+he+LKv++v++l+cyYah+++n+ LOC_Os01g69910.1 12 LHQEvKSRWLKPKEVLQILQNHDRFIITHKTPHKPPSGAWFLFNRRVLRYFRNDGYEWRKKKNGKTIAEAHERLKVDNVDALNCYYAHADKNS 104 567889*************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 tfqrr+yw+L+ ++++iv+vhy++v+ LOC_Os01g69910.1 105 TFQRRIYWMLDPAYDHIVFVHYRDVQ 130 ***********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 77.932 | 9 | 135 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 4.6E-69 | 12 | 130 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.1E-48 | 16 | 129 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 4.5E-5 | 314 | 399 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 1.34E-13 | 314 | 397 | IPR014756 | Immunoglobulin E-set |
CDD | cd00102 | 0.00931 | 315 | 398 | No hit | No description |
CDD | cd00204 | 9.23E-11 | 489 | 611 | No hit | No description |
Pfam | PF13637 | 1.6E-9 | 521 | 573 | No hit | No description |
SuperFamily | SSF48403 | 1.27E-15 | 523 | 614 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.2E-16 | 524 | 614 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.255 | 524 | 584 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 1.9E-4 | 552 | 581 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.541 | 552 | 584 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 0.012 | 713 | 735 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.181 | 714 | 743 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.014 | 715 | 734 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.83 | 736 | 758 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.169 | 737 | 765 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.052 | 738 | 758 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 6.632 | 814 | 843 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 879 aa Download sequence Send to blast |
MQHQQGFDTH RLHQEVKSRW LKPKEVLQIL QNHDRFIITH KTPHKPPSGA WFLFNRRVLR 60 YFRNDGYEWR KKKNGKTIAE AHERLKVDNV DALNCYYAHA DKNSTFQRRI YWMLDPAYDH 120 IVFVHYRDVQ EGSISVSALN DSSTSNQNGS GSRAEAQSSP GLTSELFAPC LNSCSPGSAE 180 EVSSQIMAIN NETNSVSQPD WVQHCNQAAL RKLKVQLSLE DREDHDVDAK DIPSNSEPIT 240 VYGIQNEEPG TCRNLADVFS GLEFSKENHP EETGLPFSST IDVLKNSDTW LEEDQIEAIL 300 HSASMIVTEN QWFNIREVSP EWSYCSESTK VIIAGDFLRD PSHGSWAIVF GDVKVHAEIV 360 QQGVIRCHTP CLDARKVTMY LIDENEKACS EARQFEFHNK PTKSVVCENR KPCREVHESE 420 LHQRPTESNN ELLLLFNYAQ LLFDGHVSEQ FLKFGLPFPN LECGLQVSPS EIMKGASERL 480 NRDTAVNCVM EVLLNNKFEE WLFSKYEQNS EGNHFLPRQY HGVIHTIAAL GYNWALKLLL 540 NSGVLVNYRD ANGWTALHWA ARFGREETVV LLLDAGAAAG ALSDPTAQDP AAKTPASVAS 600 AYGFKGLSAY LSEAELIAHL HSLESKENGS SGDQISRVVG RISDTSAHAQ SGSDDQLALK 660 ESLGAMRYAV QAAGRIQTAF RIFSFRKKQQ AGLQNRGNHI ISIREVGAAS HGMLEKAALS 720 IQKNFRCWKK RKEFLKIRKN VIKIQARVRA HQQHNKYKEL LRSVGILEKV MLRWYRKGVG 780 LRGFHPGAIA MPIDEEDEDD VAKVFRKQRV ETALNKAVSR VSSIIDSPVA RQQYRRMLKM 840 HKQNKDDDEK VEVSPASHVY GSGSHHMCWL SHNNKAMH* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.18959 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32978956 | 0.0 | ||||
Expression Atlas | Q5JJP3 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os01g69910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os01g69910 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK068932 | 0.0 | AK068932.1 Oryza sativa Japonica Group cDNA clone:J023002D02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649554.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
TrEMBL | Q5JJP3 | 0.0 | Q5JJP3_ORYSJ; Os01g0923600 protein | ||||
STRING | OS01T0923600-02 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9407 | 34 | 40 | Representative plant | OGRP14406 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67310.1 | 1e-105 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os01g69910.1 |
Entrez Gene | 4327253 |