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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os01g69850.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
M-type_MADS |
Protein Properties |
Length: 220aa MW: 24283.2 Da PI: 10.4076 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os01g69850.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 78.8 | 3.8e-25 | 66 | 115 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rie+k rqv fskRr+g++KKA+EL LCd+eva+++fs+ gklyeyss
LOC_Os01g69850.1 66 RIEDKASRQVRFSKRRAGLFKKAFELALLCDVEVALLVFSPVGKLYEYSS 115
8***********************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 220 aa
Download sequence Send
to blast |
MPPPPPPHSI DPLLLLPHFS PPPHHHTHAR THARLRFPPP TRGGEGGELG FFGAGMARRG 60 RVQLRRIEDK ASRQVRFSKR RAGLFKKAFE LALLCDVEVA LLVFSPVGKL YEYSSSSIEG 120 TYDRYQQFAG ARRDLNEGST SINSDENASI HSRLRDITAW SLQNNADESD ANQLEKLEKL 180 LTNALRDTKS KKMLAKQNGE GSRSRANSSG SRGQEEGSA*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Os.20382 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10382970}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK066160 | 0.0 | AK066160.1 Oryza sativa Japonica Group cDNA clone:J013055I02, full insert sequence. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Kim SL,Lee S,Kim HJ,Nam HG,An G
OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465]
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