PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g64560.2 | ||||||||
Common Name | LOC4324795, Os01g0865600, OSNPB_010865600, P0505D12.13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 904aa MW: 97278.1 Da PI: 6.3652 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.5 | 0.00027 | 706 | 743 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P++ K s + Lek+++++ Lq LOC_Os01g64560.2 706 RQMIQDRIKELREIVPNS-----AKCSIDTLLEKTIKHMLFLQ 743 77899************6.....5899999*********9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.4E-35 | 7 | 192 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 4.19E-4 | 687 | 744 | No hit | No description |
PROSITE profile | PS50888 | 10.594 | 693 | 742 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.24E-5 | 706 | 747 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-4 | 706 | 746 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 904 aa Download sequence Send to blast |
MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AADSQRKLVW GDGHYERAAG APSISGFEAM 60 DLLLKEKAAA LRSGTGRGGG GGEGHAADGA AGHSHDRVDA LVHKAMAQQV HVVGEGVIGQ 120 AALTGLHRWI VHDIVDECEE EDEVLLEMKG QFCAGIQTIA VIPVLPRGVI QLGSTKMVME 180 EAAFIDHVRS LFQQLGSSTA VVPCGSFVQD SIMRTPFHKS LGVPTSSHSE DLAGGGNTYN 240 DDMINHQFRH QKSPASTIQS FNPVQQFYAG PTFCRPVTIA SRCDLFQPDH GSTFTLNSQS 300 EDNRSTALLK NSVSHSKTSN DAFSHAFNPL NEPNVSISGR RECVSIEQHG SCRNGEMEIT 360 IGRTASSSCT GKTNIINKVD DLLSQDCLVG CQASNATSVN RKFQTMSIVD NTKLQDGSYA 420 IPHAALVDST QYSDCFQSLL GTIQGSSSSN SNAIHVDTSH NAVHGKSNFC PLGDRNAANS 480 SDLAELLASP IPLELTGGND LFDVLQLQQK PNGSNNSEVN NRQSMPYGSE QAVKSLIGCV 540 DDDFTGLITE ADPDQLLDAI VSKIITGHKQ NVDTSASCST TVAGFDRPLH SDCHLYTTGP 600 SSGPIFCNFA SVAPVAIKTE GPAAGSRQSS SSIDKSAGCS QTQESYKSQI RLWVENNHSV 660 GSDSLSTGQA SDSLSTGQCK RSDEIGKSNR KRSRPGESAR PRPKDRQMIQ DRIKELREIV 720 PNSAKCSIDT LLEKTIKHML FLQNVAKHAD KLKGSGEPKI VSHEEGLLLK DNFEGGATWA 780 FEVGTRSMTC PIIVEDLNPP RQMLVEMLCK ERGIFLEIAD QIRGLGLTIL KGVMEVRKDK 840 IWARFAVEAN KDVTRMEIFL SLVHLLEPST GSSILSAGVE NTSLPRDSFF PSSIPASGFS 900 NCL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.14287 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32984886 | 0.0 | ||||
Expression Atlas | Q5N9E6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g64560.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g64560 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068033 | 0.0 | AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619837.1 | 0.0 | transcription factor LHW isoform X4 | ||||
TrEMBL | Q5N9E6 | 0.0 | Q5N9E6_ORYSJ; BHLH transcription factor-like protein | ||||
STRING | OS01T0865600-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 6e-55 | conserved peptide upstream open reading frame 7 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g64560.2 |
Entrez Gene | 4324795 |