PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g64560.1 | ||||||||
Common Name | LOC4324795, Os01g0865600, OSNPB_010865600, P0505D12.13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 905aa MW: 97391.3 Da PI: 6.3652 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.5 | 0.00027 | 707 | 744 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P++ K s + Lek+++++ Lq LOC_Os01g64560.1 707 RQMIQDRIKELREIVPNS-----AKCSIDTLLEKTIKHMLFLQ 744 77899************6.....5899999*********9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.3E-35 | 7 | 193 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 4.19E-4 | 688 | 745 | No hit | No description |
PROSITE profile | PS50888 | 10.594 | 694 | 743 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-4 | 707 | 747 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.24E-5 | 707 | 748 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 905 aa Download sequence Send to blast |
MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AADSQRLKLV WGDGHYERAA GAPSISGFEA 60 MDLLLKEKAA ALRSGTGRGG GGGEGHAADG AAGHSHDRVD ALVHKAMAQQ VHVVGEGVIG 120 QAALTGLHRW IVHDIVDECE EEDEVLLEMK GQFCAGIQTI AVIPVLPRGV IQLGSTKMVM 180 EEAAFIDHVR SLFQQLGSST AVVPCGSFVQ DSIMRTPFHK SLGVPTSSHS EDLAGGGNTY 240 NDDMINHQFR HQKSPASTIQ SFNPVQQFYA GPTFCRPVTI ASRCDLFQPD HGSTFTLNSQ 300 SEDNRSTALL KNSVSHSKTS NDAFSHAFNP LNEPNVSISG RRECVSIEQH GSCRNGEMEI 360 TIGRTASSSC TGKTNIINKV DDLLSQDCLV GCQASNATSV NRKFQTMSIV DNTKLQDGSY 420 AIPHAALVDS TQYSDCFQSL LGTIQGSSSS NSNAIHVDTS HNAVHGKSNF CPLGDRNAAN 480 SSDLAELLAS PIPLELTGGN DLFDVLQLQQ KPNGSNNSEV NNRQSMPYGS EQAVKSLIGC 540 VDDDFTGLIT EADPDQLLDA IVSKIITGHK QNVDTSASCS TTVAGFDRPL HSDCHLYTTG 600 PSSGPIFCNF ASVAPVAIKT EGPAAGSRQS SSSIDKSAGC SQTQESYKSQ IRLWVENNHS 660 VGSDSLSTGQ ASDSLSTGQC KRSDEIGKSN RKRSRPGESA RPRPKDRQMI QDRIKELREI 720 VPNSAKCSID TLLEKTIKHM LFLQNVAKHA DKLKGSGEPK IVSHEEGLLL KDNFEGGATW 780 AFEVGTRSMT CPIIVEDLNP PRQMLVEMLC KERGIFLEIA DQIRGLGLTI LKGVMEVRKD 840 KIWARFAVEA NKDVTRMEIF LSLVHLLEPS TGSSILSAGV ENTSLPRDSF FPSSIPASGF 900 SNCL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.14287 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32984886 | 0.0 | ||||
Expression Atlas | Q5N9E6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g64560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g64560 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068033 | 0.0 | AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619837.1 | 0.0 | transcription factor LHW isoform X4 | ||||
TrEMBL | Q5N9E6 | 0.0 | Q5N9E6_ORYSJ; BHLH transcription factor-like protein | ||||
STRING | OS01T0865600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16189 | 13 | 14 |
Representative plant | OGRP1521 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 6e-55 | conserved peptide upstream open reading frame 7 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g64560.1 |
Entrez Gene | 4324795 |