PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g63030.1 | ||||||||
Common Name | P0414E03.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 884aa MW: 101131 Da PI: 8.6784 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.4 | 2e-17 | 136 | 216 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YA + GF +r +k + + ++++ t+r+ +Cs +g++ ++kk + r+gC a++k++++ + w vtk+++ HnH++ LOC_Os01g63030.1 136 NFYNVYAVSKGFGIRLDKDHMN-TKKQRTMRQICCSHQGRNPKTKKP---------SVRIGCPAMMKINMSGaGSGWSVTKVVSAHNHPMK 216 6****************99998.5555899*********99887655.........9**************99999************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-13 | 136 | 216 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.8E-32 | 338 | 431 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.3E-5 | 620 | 653 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.299 | 620 | 656 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.0E-7 | 631 | 658 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 884 aa Download sequence Send to blast |
MDKQVKNHRP SDGTDGSREI LMDERNPTMD IVDGISQSVH DSQPDGGQSS RVAMEEDVPS 60 RVGSHDSGHG IPETRNLVPS LDWTEGNPYE KEGARIPMER MVVDNVDSSA VIPPADPQIL 120 TPMLGQRFKT ERDAYNFYNV YAVSKGFGIR LDKDHMNTKK QRTMRQICCS HQGRNPKTKK 180 PSVRIGCPAM MKINMSGAGS GWSVTKVVSA HNHPMKKSVG VTKNYQSHNQ IDEGTRGIIE 240 EMVDSSMSLT NMYGMLSGMH GGPSMVPFTR KAMDRVAYAI RRDESSDDMQ KTLDVLKDLQ 300 KRSKNFFYSI QVDEACRVKN IFWSHAVSRL NFEHFGDVIT FDTTYKTNKY NMPFAPFVGV 360 NNHFQSTFFG CALLREETEE SFTWLFNTFK ECMNGKVPIG ILTDNCPSMA AAIRTVFPNT 420 IHRVCKSHVL KKAKEFMGNI YSKCHTFKKA FHKVLTQTLT EEEFVAAWHK LIRDYNLEKS 480 VYLRHIWDIR RKWAFVYFSH RFFAGMTTTQ RSESANHVFK MFVSPSSSMN GFVKRYDRFF 540 NEKLQKEDSE EFQTSNDKVE IKTRSPIEIH ASQVYTRAVF QLFSEELTDS ISYMVKPGED 600 ESTVQVVRMN SQESFLRKEY QVSCDLEREE FSCVCKMFEH KGILCSHILR VLVQYGLSRI 660 PERYILKRWT KDARDTIPPH LHGYKDDVDA SQSRSYIHVM LKRKTVEVAK IANKDVQTFK 720 MAMTVMNKLL EDMKNQLSLD DGDNSREAPK RAARHKSRST VLTKDGNEDV GGGDEDSEYD 780 VPSEDEGGNL TADILPPLKK RSRGRPKVNR YKSGGEVASL KRRKEVGIEK KNTTNECESV 840 EEENQVIDHD DEVPFPRRFC HTCHEAGHNS RTCGRTSTYK RKL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.91121 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297602529 | 0.0 | ||||
Expression Atlas | Q5N9T7 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g63030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g63030 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003242 | 0.0 | AP003242.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0414E03. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880431.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | Q5N9T7 | 0.0 | Q5N9T7_ORYSJ; Putative far-red impaired response protein | ||||
STRING | OS04T0354200-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-114 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g63030.1 |