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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os01g60520.1 |
Common Name | LOC107276287, Os01g0820700, OSNPB_010820700, P0703B11.9 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
WRKY |
Protein Properties |
Length: 284aa MW: 31036.9 Da PI: 6.2817 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os01g60520.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 68.5 | 9.7e-22 | 71 | 131 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59
Dg+ WrKYGqK++k+s fpr YYrC+++ +C + k v++++ +dp + +tY+ eH+++
LOC_Os01g60520.1 71 DGHLWRKYGQKNIKDSAFPRLYYRCSYRedrQCLASKLVQQENdDDPPLYRVTYTYEHTCN 131
9**************************99999*******987516899***********97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MASPRLKREQ SFDFEEASAQ EAVGSASASY SPPGGGGVFG ISPPESSPRD GRKRRKDRPS 60 LVKHTFTPHF DGHLWRKYGQ KNIKDSAFPR LYYRCSYRED RQCLASKLVQ QENDDDPPLY 120 RVTYTYEHTC NTTPVPTPDV VAEQPPPGAA GDAYLLRFGS SAGGGGGGAH QQQTERERQQ 180 QNTARRRPFM MLSFDSSSSH QLHEQPHAFP PDGQLPATAA AASPSSFTAA EALAAPPLTT 240 TMNDGGDLFS TWDALRYGLD YDHGHLGNHV YLPDDCNGGD DNY*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP003302 | 0.0 | AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11. |
GenBank | AP003348 | 0.0 | AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12. |
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |