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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os01g56690.1 |
Common Name | Os01g0773800, P0490D09.18 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 274aa MW: 29881.4 Da PI: 5.4049 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os01g56690.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 25.8 | 1.9e-08 | 131 | 191 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...............TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.as............kapskKlsKaeiLekAveYIksL 54
h +rEr RR+r+ ++++ L+ +lP+ as + K +i+ A +YI++L
LOC_Os01g56690.1 131 RHIMRERLRRERLSQGYADLQAILPTgASsskvlvkslirnYMS---GGKNTIVAAAANYIREL 191
599***********************997777777775444222...33556777888888777 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MENDDDVEHP FYYFVHDDAA AGVDDHEELL ASLGFLLPPP PPPPPPPQPD QGRSAFAAYQ 60 STAAMASSSS SSESLSRRYH SSASNVHRRM HRFLRSIYDD AGDDAGATAE MQPAEGEQQQ 120 AAPSGGSARF RHIMRERLRR ERLSQGYADL QAILPTGASS SKVLVKSLIR NYMSGGKNTI 180 VAAAANYIRE LEGRKGWLCA QNELLERTTP KPGAGMVVKV RAESELGSTV DVFEAVLRRL 240 KAMDELQVTA IQSWFGAGGM WMDVAVESKE KED*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP003265 | 0.0 | AP003265.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0490D09. |
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |